Deatailed information for gene ENSG00000183067
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015384
- Gene Symbol: IGSF5
- Ensembl ID: ENSG00000183067
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Gene locus: chr21:39745406-39802096
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0627
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.569
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-endodermal,TAMR-MCF7,Keratinocytes192627,K1,hTERT-HME1,Hepatocyte-H9,MCF-7,Naive-hESC,A-549,HFFc6,HeLa-S3,LNCaP,KU-19-19,H9-hESC,Primed-hESC,NCI-H1437,ARPE-19,Hep-G2,HT-1197,HT-1376,HCC1599,HUES64,NPC-H9,RT-112,MCF7-FASR
- Related loop:
chr21:39500000-39525000~~chr21:39775000-39800000,
chr21:39517303-39519751~~chr21:39787215-39789565,
chr21:39650000-39675000~~chr21:39750000-39775000,
chr21:39750000-39775000~~chr21:39900000-39925000,
chr21:39750000-39775000~~chr21:40525000-40550000,
chr21:39750000-39775000~~chr21:40625000-40650000,
chr21:39750000-39775000~~chr21:41700000-41725000,
chr21:39775000-39800000~~chr21:39900000-39925000,
chr21:39775000-39800000~~chr21:40000000-40025000,
chr21:39775000-39800000~~chr21:40075000-40100000,
chr21:39775000-39800000~~chr21:40100000-40125000,
chr21:39775000-39800000~~chr21:40125000-40150000,
chr21:39775000-39800000~~chr21:40375000-40400000,
chr21:39787215-39789565~~chr21:39910588-39912275,
chr21:39787215-39789565~~chr21:40120093-40122096,
chr21:39787253-39789571~~chr21:39855456-39856836,
chr21:39787253-39789571~~chr21:39866317-39868146,
chr21:39787253-39789571~~chr21:39910500-39912317,
chr21:39787253-39789571~~chr21:40120165-40122042,
chr21:39787296-39789560~~chr21:39910501-39912411,
chr21:39787299-39789416~~chr21:40120132-40122088,
chr21:39787325-39789860~~chr21:40119606-40122062,
chr21:39787329-39789539~~chr21:40119863-40122093,
chr21:39787332-39789505~~chr21:39910608-39912279,
chr21:39787332-39789505~~chr21:40120236-40122026,
chr21:39787336-39789600~~chr21:40119842-40122098,
chr21:39787340-39789791~~chr21:40120108-40122096,
chr21:39787452-39789550~~chr21:40119861-40122095,
chr21:39787515-39789551~~chr21:40120098-40121959,
chr21:39787550-39789577~~chr21:40119552-40122087,
chr21:39787674-39789450~~chr21:40120405-40121950,
chr21:39787674-39789450~~chr21:40385781-40387172,
chr21:39787686-39789383~~chr21:40120169-40122003,
chr21:39787697-39789341~~chr21:40120354-40121926,
chr21:39787701-39789371~~chr21:40120284-40121931,
chr21:39787705-39789776~~chr21:39910608-39912422,
chr21:39787705-39789776~~chr21:40120273-40121717,
chr21:39787706-39789391~~chr21:40120171-40121990,
chr21:39787712-39789349~~chr21:40120365-40121817,
chr21:39787716-39789399~~chr21:40120443-40121742,
chr21:39787717-39789400~~chr21:40120433-40122067,
chr21:39787718-39789326~~chr21:40120460-40121701,
chr21:39787723-39789945~~chr21:40120221-40121922,
chr21:39787733-39789380~~chr21:40120291-40121826,
chr21:39787751-39789240~~chr21:40120130-40122082,
chr21:39787773-39789310~~chr21:40120389-40121831,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR662QKG, GSE118716, GSE108787, 4DNFI5SUHCGZ, ENCSR146FPM, 4DNFIEYQ5ZIR, ENCSR478BMT, ENCSR113OIR, 4DNFII6AN691, GSE69643, GSE99541, ENCSR381DCY, GSE155380, GSE97394, 4DNFICEGAHRC, 4DNFIL9M97T2, Direct, ENCSR314HAC, ENCSR386KHY, GSE116872, ENCSR244BBG, ENCSR393LOP, ENCSR991JXX, ENCSR255XYX, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, 4DNFIJ8JKKWJ, ENCSR933UZH, ENCSR833CMG, 4DNFIDZT7PR8, 4DNFIFLJLIS5, 4DNFINEQY95T, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence: MCF-7
- Cohesin-DEGs, number of studies: 1
- Cohesin-DEGs, study: GSE59908
- Cohesin-DEGs, subunit: Rad21