Deatailed information for gene ENSG00000183145
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015399
- Gene Symbol: RIPPLY3
- Ensembl ID: ENSG00000183145
-
Gene locus: chr21:37006149-37019659
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1486
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.661
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: NCI-H1437,GM12891,GM12878,NPC-H9,Skin-Fibroblast,Hep-G2,K-562,HT-1197,H1-hESC,HT-1376,GM19238,MSLCL,SU-DHL-4,PAEC,K1,SU-DHL-2,KU-19-19,Hepatocyte-H9
- Related loop:
chr21:36629967-36632038~~chr21:37009098-37011099,
chr21:36630079-36631909~~chr21:37009057-37010910,
chr21:36938297-36940389~~chr21:37009089-37011147,
chr21:36938603-36940392~~chr21:37009094-37011139,
chr21:36938709-36940332~~chr21:37009131-37010729,
chr21:36938795-36940479~~chr21:37009057-37010910,
chr21:36938878-36940353~~chr21:37009171-37010708,
chr21:36976114-36978430~~chr21:37009040-37011094,
chr21:36976280-36978448~~chr21:37009094-37011139,
chr21:36976388-36978333~~chr21:37009080-37011137,
chr21:36976392-36978397~~chr21:37009089-37011147,
chr21:36976394-36978416~~chr21:37009250-37011101,
chr21:36976407-36978411~~chr21:37009056-37011247,
chr21:36976409-36978425~~chr21:37009116-37011027,
chr21:36976410-36978425~~chr21:37009307-37011128,
chr21:36976414-36978490~~chr21:37009170-37010886,
chr21:36976420-36977983~~chr21:37009274-37010871,
chr21:36976420-36978300~~chr21:37009165-37010905,
chr21:36976420-36978406~~chr21:37009183-37010907,
chr21:36976425-36978091~~chr21:37009147-37011170,
chr21:36976435-36978463~~chr21:37009096-37011260,
chr21:36976463-36978161~~chr21:37009171-37010708,
chr21:36976463-36978487~~chr21:37009057-37010910,
chr21:36999877-37001750~~chr21:37078770-37080416,
chr21:36999885-37001435~~chr21:37078647-37080436,
chr21:36999930-37001432~~chr21:37078697-37080394,
chr21:36999934-37001381~~chr21:37086150-37088199,
- Cohesin-loop type: Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR404HWQ, ENCSR732QOH, ENCSR247RGI, ENCSR338WUS, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, Direct, ENCSR527RXH, ENCSR668RDP, ENCSR381DCY, ENCSR386KHY, ENCSR833CMG, ENCSR933UZH, ENCSR981FNA, ENCSR146FPM, ENCSR587DSF, ENCSR452NHL
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .