Deatailed information for gene ENSG00000183255
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015427
- Gene Symbol: PTTG1IP
- Ensembl ID: ENSG00000183255
-
Gene locus: chr21:44849585-44873903
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-44049059-44050644,
chr21-44051500-44052149,
chr21-44058034-44059019,
chr21-44060331-44060715,
chr21-44061133-44061570,
chr21-44062415-44062878,
chr21-44063088-44064391,
chr21-44065260-44065880,
chr21-44066159-44066445,
chr21-44067082-44068169,
chr21-44069413-44070104,
chr21-44070382-44070916,
chr21-44071581-44073072,
chr21-44074197-44074929,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44474734-44475102,
chr21-44477225-44484621,
chr21-44484854-44488529,
chr21-44488757-44489043,
chr21-44489948-44491135,
chr21-44493207-44494864,
chr21-44495074-44495354,
chr21-44496153-44497242,
chr21-44498019-44500523,
chr21-44501160-44501716,
chr21-44502563-44504881,
chr21-44505123-44507485,
chr21-44507767-44517880,
chr21-44518230-44523339,
chr21-44523567-44524569,
chr21-44524891-44530101,
chr21-44648535-44651485,
chr21-44652014-44652466,
chr21-44652956-44653464,
chr21-44653790-44655119,
chr21-44655342-44656104,
chr21-44657623-44658306,
chr21-44658877-44659438,
chr21-44660721-44661286,
chr21-44661660-44661908,
chr21-44666337-44666984,
chr21-44669156-44669832,
chr21-44670503-44671575,
chr21-44672289-44672609,
chr21-44674682-44674829,
chr21-44770932-44775360,
chr21-44775568-44776159,
chr21-44778211-44780009,
chr21-44780867-44781685,
chr21-44784599-44786454,
chr21-44786700-44787596,
chr21-44788341-44788598,
chr21-44789666-44790323,
chr21-44791310-44795621,
chr21-44797363-44798119,
chr21-44799103-44805501,
chr21-44814747-44820942,
chr21-44842094-44850066,
chr21-44850330-44851998,
chr21-44852235-44856871,
chr21-44857206-44857817,
chr21-44858153-44859485,
chr21-44860020-44862529,
chr21-44862997-44876511,
chr21-44876848-44922035,
chr21-44922496-44936465,
chr21-44946260-44956117,
chr21-44956348-44960682,
chr21-44962017-44963405,
chr21-44964360-44974179,
chr21-44974593-45005352,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45316533-45338135,
chr21-45339035-45339421,
chr21-45340328-45340876,
chr21-45341176-45342108,
chr21-45342847-45354233,
chr21-46048586-46063227,
chr21-46063802-46070240,
chr21-46071064-46071598,
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Co-expression with cohesin genes Rho = 0.5415
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.305
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.813
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,K1,H1-Mesenchymal,Hepatocyte-H9,GM19239,HEK293T,MCF-7,K-562,HFFc6,PAEC,HeLa-S3,SU-DHL-2,KU-19-19,H9-hESC,iPSC,Hep-G2,H1-hESC,HT-1376,SU-DHL-4,Skin-Fibroblast,Jurkat,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:27500000-27525000~~chr21:44825000-44850000,
chr21:44050000-44075000~~chr21:44850000-44875000,
chr21:44075000-44100000~~chr21:44850000-44875000,
chr21:44075000-44100000~~chr21:44875000-44900000,
chr21:44325000-44350000~~chr21:44850000-44875000,
chr21:44325000-44350000~~chr21:44875000-44900000,
chr21:44475000-44500000~~chr21:44875000-44900000,
chr21:44500000-44525000~~chr21:44875000-44900000,
chr21:44650000-44675000~~chr21:44875000-44900000,
chr21:44775000-44800000~~chr21:44875000-44900000,
chr21:44799344-44802391~~chr21:44874408-44876218,
chr21:44799365-44801932~~chr21:44874652-44876234,
chr21:44799372-44802443~~chr21:44874407-44876256,
chr21:44799411-44802024~~chr21:44845318-44847256,
chr21:44799420-44802311~~chr21:44874548-44876442,
chr21:44799651-44802591~~chr21:44845216-44847176,
chr21:44799726-44802540~~chr21:44845295-44847056,
chr21:44799726-44802540~~chr21:44873123-44876204,
chr21:44800017-44802385~~chr21:44874479-44876246,
chr21:44816840-44819191~~chr21:44845055-44847370,
chr21:44817582-44819008~~chr21:44845213-44846787,
chr21:44845305-44846867~~chr21:44873085-44874364,
chr21:44845305-44846867~~chr21:44882190-44883389,
chr21:44845323-44847405~~chr21:44871275-44872729,
chr21:44845331-44847295~~chr21:44932164-44933556,
chr21:44850000-44875000~~chr21:44950000-44975000,
chr21:44850000-44875000~~chr21:45125000-45150000,
chr21:44850000-44875000~~chr21:45325000-45350000,
chr21:44850000-44875000~~chr21:46050000-46075000,
chr21:44869465-44870633~~chr21:44880328-44882150,
chr21:44875000-44900000~~chr21:44975000-45000000,
chr21:44875000-44900000~~chr21:45125000-45150000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE43070, 4DNFIMROE6N4, GSE118716, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR361AYD, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR732QOH, 4DNFIBM714BP, ENCSR668RDP, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, ENCSR128RPG, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, ENCSR314HAC, ENCSR479MTN, GSE44267, 4DNFIPAF4PYT, ENCSR404HWQ, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HL-60,SLK,P3HR-1,MCF-10A,HeLa-S3
- Cohesin-DEGs, number of studies: 7
- Cohesin-DEGs, study: GSE140651,GSE131581,GSE154086,GSE138937,GSE130558
- Cohesin-DEGs, subunit: SMC3,SA2,WAPL,CTCF,SMC1,Rad21