Deatailed information for gene ENSG00000183421
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015465
- Gene Symbol: RIPK4
- Ensembl ID: ENSG00000183421
-
Gene locus: chr21:41739372-41767052
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-40452725-40454179,
chr21-40460593-40461061,
chr21-40464758-40465002,
chr21-40465648-40468547,
chr21-40471203-40471451,
chr21-40473897-40474333,
chr21-41177726-41178272,
chr21-41179066-41179600,
chr21-41186135-41187378,
chr21-41196787-41197468,
chr21-41199133-41199869,
chr21-41200720-41201085,
chr21-41203279-41204508,
chr21-41207311-41209537,
chr21-41213457-41213771,
chr21-41214800-41215219,
chr21-41216467-41217270,
chr21-41217596-41218016,
chr21-41218863-41219208,
chr21-41219451-41220069,
chr21-41221113-41223031,
chr21-41223341-41223563,
chr21-41224862-41225153,
chr21-41279309-41286918,
chr21-41287349-41287624,
chr21-41289470-41289790,
chr21-41290198-41290717,
chr21-41291671-41292309,
chr21-41295717-41296311,
chr21-41303650-41304823,
chr21-41310090-41310814,
chr21-41312700-41313050,
chr21-41315579-41317852,
chr21-41318233-41318586,
chr21-41319164-41319889,
chr21-41320310-41323824,
chr21-41349571-41350286,
chr21-41350528-41350953,
chr21-41351402-41351758,
chr21-41351961-41352359,
chr21-41355172-41355403,
chr21-41356031-41356141,
chr21-41357146-41357972,
chr21-41358175-41363229,
chr21-41363511-41364777,
chr21-41365610-41366077,
chr21-41366312-41368581,
chr21-41368785-41370859,
chr21-41373113-41380866,
chr21-41425596-41431302,
chr21-41431562-41433383,
chr21-41433595-41438072,
chr21-41438421-41440223,
chr21-41440635-41442106,
chr21-41442477-41454571,
chr21-41454845-41457031,
chr21-41457310-41463776,
chr21-41465279-41466074,
chr21-41466276-41469670,
chr21-41470417-41471816,
chr21-41472869-41473818,
chr21-41474341-41474869,
chr21-41499971-41502531,
chr21-41504215-41505004,
chr21-41505347-41509529,
chr21-41509897-41510115,
chr21-41510454-41511185,
chr21-41511910-41512243,
chr21-41512550-41513397,
chr21-41518109-41518579,
chr21-41520133-41522085,
chr21-41523158-41523411,
chr21-41524547-41525042,
chr21-41600668-41607029,
chr21-41607264-41617134,
chr21-41617741-41618159,
chr21-41619036-41619135,
chr21-41620001-41623327,
chr21-41625452-41626403,
chr21-41627233-41628368,
chr21-41629667-41633608,
chr21-41634030-41636192,
chr21-41636682-41637531,
chr21-41638110-41638628,
chr21-41639388-41640365,
chr21-41640676-41643854,
chr21-41645785-41646060,
chr21-41647714-41649300,
chr21-41649662-41650037,
chr21-41650707-41652356,
chr21-41653070-41654701,
chr21-41656820-41657981,
chr21-41658412-41661789,
chr21-41662180-41667516,
chr21-41667934-41670919,
chr21-41671179-41674646,
chr21-41733728-41735705,
chr21-41736150-41737391,
chr21-41737818-41738231,
chr21-41740057-41742738,
chr21-41743343-41747580,
chr21-41748428-41748917,
chr21-41749162-41749630,
chr21-41750044-41752982,
chr21-41753429-41753815,
chr21-41754380-41755068,
chr21-41755301-41757502,
chr21-41758041-41771900,
chr21-41823944-41825655,
chr21-41827924-41829367,
chr21-41830742-41836906,
chr21-41837774-41838052,
chr21-41838738-41839946,
chr21-41842489-41843082,
chr21-41844161-41847949,
chr21-41849107-41849386,
chr21-41850983-41851877,
chr21-41852110-41853345,
chr21-41853692-41855866,
chr21-41857229-41860002,
chr21-41861355-41866024,
chr21-41866387-41867228,
chr21-41867863-41869049,
chr21-41871292-41871941,
chr21-41872703-41874138,
chr21-41874717-41875401,
chr21-42072432-42077357,
chr21-42077774-42087507,
chr21-42088172-42088785,
chr21-42089069-42090481,
chr21-42091730-42092368,
chr21-42092772-42095377,
chr21-42096641-42096982,
chr21-42097185-42102518,
chr21-42102731-42103045,
chr21-42103416-42126825,
chr21-42422915-42428748,
chr21-42429069-42429373,
chr21-42429892-42431565,
chr21-42432008-42432290,
chr21-42433805-42434474,
chr21-42434904-42435230,
chr21-42436840-42441137,
chr21-42442018-42442307,
chr21-42443007-42454584,
chr21-42648967-42651377,
chr21-42651659-42660395,
chr21-42660643-42661368,
chr21-42661749-42667131,
chr21-42667757-42669990,
chr21-42670294-42674908,
chr21-43745728-43760952,
chr21-43761154-43780032,
-
Co-expression with cohesin genes Rho = 0.0720
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.757
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.858
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,K1,H1-Mesenchymal,H1-Mesendoderm,MCF-7,HEK293T,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,ARPE-19,HCT-116,Hep-G2,H1-hESC,HCC1599,BMEC,H1-NPC,RT-112,CyT49-endoderm,Skin-Fibroblast,CC-2551,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:40450000-40475000~~chr21:41750000-41775000,
chr21:41175000-41200000~~chr21:41750000-41775000,
chr21:41200000-41225000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41350000-41375000~~chr21:41750000-41775000,
chr21:41425000-41450000~~chr21:41725000-41750000,
chr21:41425000-41450000~~chr21:41750000-41775000,
chr21:41450000-41475000~~chr21:41750000-41775000,
chr21:41500000-41525000~~chr21:41750000-41775000,
chr21:41600000-41625000~~chr21:41725000-41750000,
chr21:41600000-41625000~~chr21:41750000-41775000,
chr21:41609924-41613852~~chr21:41745052-41747219,
chr21:41609924-41613852~~chr21:41768024-41769511,
chr21:41611457-41614038~~chr21:41745463-41746894,
chr21:41611527-41614046~~chr21:41767485-41769529,
chr21:41611555-41613782~~chr21:41767989-41769457,
chr21:41611562-41613730~~chr21:41767467-41769591,
chr21:41611600-41614022~~chr21:41767431-41769612,
chr21:41611609-41613772~~chr21:41767416-41769546,
chr21:41611633-41613763~~chr21:41768012-41769738,
chr21:41625000-41650000~~chr21:41725000-41750000,
chr21:41625000-41650000~~chr21:41750000-41775000,
chr21:41650000-41675000~~chr21:41750000-41775000,
chr21:41725000-41750000~~chr21:41825000-41850000,
chr21:41725000-41750000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:41850000-41875000,
chr21:41750000-41775000~~chr21:42075000-42100000,
chr21:41750000-41775000~~chr21:42100000-42125000,
chr21:41750000-41775000~~chr21:42425000-42450000,
chr21:41750000-41775000~~chr21:42650000-42675000,
chr21:41750000-41775000~~chr21:43750000-43775000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, GSE43070, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIMROE6N4, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE108787, GSE116869, 4DNFIPV5KFMK, GSE120294, ENCSR672RHL, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFIFHU75I5, 4DNFIL5K3MA1, 4DNFI15FPSQL, 4DNFINW9P6XF, GSE155380, 4DNFICSTCJQZ, 4DNFIV239W4L, 4DNFIL9M97T2, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFISTWNV9C, GSE52457, 4DNFIYWONU7A, 4DNFIM2BMJ33, 4DNFIZ95S6TR, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIBY3UHJB, 4DNFIYDBBSE3, GSE101921, GSE116872, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, ENCSR110JOO, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIBKZK63V, ENCSR507AHE
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: HAP1,MCF-10A
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE154086,GSE126635
- Cohesin-DEGs, subunit: CTCF,SMC3