Deatailed information for gene ENSG00000183527
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015490
- Gene Symbol: PSMG1
- Ensembl ID: ENSG00000183527
-
Gene locus: chr21:39174768-39183451
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-37673084-37677389,
chr21-37682721-37683272,
chr21-37683477-37684894,
chr21-37686462-37687749,
chr21-37690924-37691730,
chr21-37693407-37693614,
chr21-37696949-37697211,
chr21-37698134-37702382,
chr21-37703638-37705198,
chr21-37709173-37709675,
chr21-37710382-37713905,
chr21-37714213-37715154,
chr21-37717255-37717999,
chr21-37718834-37719293,
chr21-37720614-37721055,
chr21-37848590-37851352,
chr21-37851997-37852496,
chr21-37854587-37856602,
chr21-37858133-37858424,
chr21-37862475-37863023,
chr21-37863574-37864405,
chr21-37865357-37865570,
chr21-37865868-37866779,
chr21-37868675-37872241,
chr21-37873511-37874441,
chr21-37874747-37875524,
chr21-38151064-38151512,
chr21-38155827-38157030,
chr21-38157453-38161826,
chr21-38165622-38167121,
chr21-38167829-38173299,
chr21-38173632-38174464,
chr21-38348297-38360784,
chr21-38362993-38363357,
chr21-38365365-38365661,
chr21-38375250-38375602,
chr21-38376290-38378168,
chr21-38379785-38381250,
chr21-38383484-38384452,
chr21-38384798-38385015,
chr21-38387044-38387525,
chr21-38388662-38389604,
chr21-38390009-38390598,
chr21-38394330-38394741,
chr21-38473884-38475107,
chr21-38475558-38475868,
chr21-38476117-38476979,
chr21-38477310-38477577,
chr21-38478606-38479246,
chr21-38479953-38480442,
chr21-38483538-38484977,
chr21-38485444-38487130,
chr21-38487957-38489481,
chr21-38489687-38490173,
chr21-38490421-38491046,
chr21-38491594-38492338,
chr21-38493489-38495573,
chr21-38496136-38496508,
chr21-38498193-38500425,
chr21-38501041-38501534,
chr21-38503073-38508323,
chr21-38509890-38510117,
chr21-38510943-38512229,
chr21-38512754-38513121,
chr21-38519985-38520039,
chr21-38520552-38520872,
chr21-38524127-38524519,
chr21-38524820-38525118,
chr21-38525327-38525704,
chr21-38528423-38528734,
chr21-38531264-38531985,
chr21-38544663-38545173,
chr21-38548479-38549133,
chr21-38655893-38656196,
chr21-38659292-38662622,
chr21-38664405-38665212,
chr21-38666630-38671138,
chr21-38698999-38699651,
chr21-38700535-38701065,
chr21-38701561-38701796,
chr21-38702989-38703239,
chr21-38703807-38703915,
chr21-38707733-38707894,
chr21-38709620-38709912,
chr21-38710302-38714342,
chr21-38714859-38715706,
chr21-38717916-38718385,
chr21-38719363-38719850,
chr21-38722023-38723084,
chr21-38724534-38724638,
chr21-38728482-38728788,
chr21-38729814-38737491,
chr21-38739757-38741012,
chr21-38741965-38744918,
chr21-38748492-38748976,
chr21-38749272-38749904,
chr21-38800466-38816528,
chr21-38816889-38818881,
chr21-38819201-38823342,
chr21-38823665-38827360,
chr21-38849471-38854263,
chr21-38856453-38857719,
chr21-38858525-38859524,
chr21-38859766-38860539,
chr21-38861132-38861513,
chr21-38862000-38863279,
chr21-38864066-38864405,
chr21-38867234-38867512,
chr21-38869262-38870389,
chr21-38872690-38873110,
chr21-38873491-38873832,
chr21-38874324-38875151,
chr21-38875623-38877038,
chr21-38878486-38879325,
chr21-38879734-38880718,
chr21-38881074-38881602,
chr21-38887207-38887702,
chr21-38888790-38889935,
chr21-38894935-38895727,
chr21-38897435-38899519,
chr21-38999239-39001723,
chr21-39002157-39005860,
chr21-39006216-39008144,
chr21-39009600-39010167,
chr21-39010386-39017610,
chr21-39018454-39019370,
chr21-39019594-39020196,
chr21-39020597-39024249,
chr21-39024973-39026738,
chr21-39171426-39171861,
chr21-39172222-39172621,
chr21-39173429-39176751,
chr21-39178845-39179222,
chr21-39180628-39180930,
chr21-39181962-39185522,
chr21-39344676-39351972,
chr21-39354073-39354700,
chr21-39359443-39359751,
chr21-39362398-39362789,
chr21-39363116-39364202,
chr21-39368147-39369223,
chr21-39369691-39371112,
chr21-39372448-39374699,
chr21-39377536-39378376,
chr21-39378615-39382320,
chr21-39383016-39384062,
chr21-39384730-39386685,
chr21-39386888-39390967,
chr21-39395561-39395853,
chr21-39396172-39397021,
chr21-39398076-39398420,
chr21-39398702-39399019,
chr21-39402135-39402399,
chr21-39403382-39403965,
chr21-39404418-39404728,
chr21-39405210-39405509,
chr21-39409531-39409809,
chr21-39412553-39413050,
chr21-39413873-39414796,
chr21-39417782-39417992,
chr21-39419242-39419515,
chr21-39420248-39420774,
chr21-39421127-39421401,
chr21-39422232-39423256,
chr21-39424092-39424501,
chr21-39425591-39426058,
chr21-39427352-39427664,
chr21-39430503-39430780,
chr21-39431574-39431827,
chr21-39435612-39435881,
chr21-39436505-39436763,
chr21-39440305-39444075,
chr21-39444581-39446444,
chr21-39447001-39447710,
chr21-39625225-39625791,
chr21-39629704-39632293,
chr21-39632853-39634794,
chr21-39636297-39636947,
chr21-39637455-39637794,
chr21-39638015-39640435,
chr21-39641876-39642112,
chr21-39642413-39642648,
chr21-39643132-39643834,
chr21-39644110-39644390,
chr21-39647406-39650769,
chr21-39652021-39652489,
chr21-39655291-39655839,
chr21-39656185-39657598,
chr21-39657848-39658299,
chr21-39660012-39662667,
chr21-39663746-39664966,
chr21-39666204-39668198,
chr21-39668545-39670696,
chr21-39673143-39674204,
chr21-39674626-39675258,
chr21-39699714-39700227,
chr21-39701576-39703321,
chr21-39704596-39707757,
chr21-39709616-39710268,
chr21-39710803-39711977,
chr21-39712178-39719074,
chr21-39720460-39720773,
chr21-39721276-39722005,
chr21-39723416-39724008,
-
Co-expression with cohesin genes Rho = 0.5776
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.318
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.873
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,DU145,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,ARPE-19,OCI-AML-3,H1-hESC,HT-1376,MSLCL,U-937,SU-DHL-4,RT-112,KBM-7,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:25725000-25750000~~chr21:39175000-39200000,
chr21:29050000-29075000~~chr21:39175000-39200000,
chr21:31650000-31675000~~chr21:39175000-39200000,
chr21:31675000-31700000~~chr21:39175000-39200000,
chr21:34350000-34375000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36300000-36325000~~chr21:39175000-39200000,
chr21:37675000-37700000~~chr21:39150000-39175000,
chr21:37700000-37725000~~chr21:39150000-39175000,
chr21:37850000-37875000~~chr21:39175000-39200000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38350000-38375000~~chr21:39150000-39175000,
chr21:38355322-38357346~~chr21:39174194-39176266,
chr21:38375000-38400000~~chr21:39150000-39175000,
chr21:38379619-38381509~~chr21:39174528-39176139,
chr21:38388533-38390282~~chr21:39174059-39176516,
chr21:38475000-38500000~~chr21:39150000-39175000,
chr21:38494233-38495488~~chr21:39174059-39176516,
chr21:38500000-38525000~~chr21:39150000-39175000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38504661-38506972~~chr21:39174299-39176494,
chr21:38504693-38507356~~chr21:39174059-39176516,
chr21:38504694-38507025~~chr21:39174543-39176122,
chr21:38504745-38506938~~chr21:39174194-39176266,
chr21:38504928-38507061~~chr21:39174538-39176142,
chr21:38505153-38506875~~chr21:39174680-39176016,
chr21:38525000-38550000~~chr21:39150000-39175000,
chr21:38650000-38675000~~chr21:39150000-39175000,
chr21:38668443-38670408~~chr21:39174561-39176567,
chr21:38668612-38670314~~chr21:39174250-39176317,
chr21:38668668-38670175~~chr21:39174586-39175835,
chr21:38698689-38700039~~chr21:39174554-39176142,
chr21:38700000-38725000~~chr21:39150000-39175000,
chr21:38725000-38750000~~chr21:39150000-39175000,
chr21:38732732-38735278~~chr21:39174250-39176317,
chr21:38732781-38735273~~chr21:39174254-39176512,
chr21:38733112-38735280~~chr21:39174255-39176521,
chr21:38800000-38825000~~chr21:39175000-39200000,
chr21:38810787-38812114~~chr21:39174059-39176516,
chr21:38850000-38875000~~chr21:39150000-39175000,
chr21:38875000-38900000~~chr21:39150000-39175000,
chr21:39000000-39025000~~chr21:39150000-39175000,
chr21:39150000-39175000~~chr21:39375000-39400000,
chr21:39150000-39175000~~chr21:39700000-39725000,
chr21:39175000-39200000~~chr21:39350000-39375000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39625000-39650000,
chr21:39175000-39200000~~chr21:39650000-39675000,
chr21:39175000-39200000~~chr21:41350000-41375000,
chr21:39175000-39200000~~chr21:41625000-41650000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, GSE43070, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR852KQC, GSE108787, ENCSR672RHL, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIP25GZGA, ENCSR478BMT, 4DNFIBM714BP, 4DNFIYD8LO9Z, GSE111537, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIAS8LV1C, GSE165038, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFI8Y9SRP2, GSE101921, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR110JOO, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIZGCA8AH, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: SLK,P3HR-1,MCF-10A,U2OS,Keratinocytes
- Cohesin-DEGs, number of studies: 8
- Cohesin-DEGs, study: GSE83870,GSE140651,GSE101921,GSE154086,GSE138937,GSE89799
- Cohesin-DEGs, subunit: CTCF,SMC1,Rad21,SMC3