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Basic information

CohesinDB ID: CDBG00015492

Gene Symbol: COL18A1-AS1

Ensembl ID: ENSG00000183535

Gene locus: chr21:45419715-45425040 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2160 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.555
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,A-549,HFFc6,HeLa-S3,H9-hESC,REC-1,HCT-116,H1-hESC,HCC1599,Motor-Neuron,RT-112,CC-2551,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIRZA6EV6, GSE116875, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, GSE118716, GSE108787, 4DNFIB7QTIMH, ENCSR794RDS, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIPV5KFMK, 4DNFIDSWKFF5, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIMEG1QIC, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIA6NSSBJ, 4DNFIFHU75I5, 4DNFIYD8LO9Z, 4DNFIHN2QSMX, GSE155380, ENCSR444BAR, 4DNFIV239W4L, 4DNFICEGAHRC, ENCSR587DSF, GSE80820, 4DNFIE8T8JZ8, 4DNFISTWNV9C, 4DNFIBT4EAKN, 4DNFIJ5DQZVK, GSE52457, 4DNFIYWONU7A, Direct, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIX7H3CE2, GSE101921, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR228TUX, GSE116872, ENCSR393LOP, 4DNFIOCW5AEM, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI7XAZNNQ, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIBKZK63V, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000183535