Deatailed information for gene ENSG00000183844
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015587
- Gene Symbol: FAM3B
- Ensembl ID: ENSG00000183844
-
Gene locus: chr21:41304211-41357431
Strand: +
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-41124570-41125247,
chr21-41125609-41125847,
chr21-41131071-41131294,
chr21-41132225-41137041,
chr21-41137303-41137741,
chr21-41138800-41139026,
chr21-41139502-41140501,
chr21-41140880-41142822,
chr21-41143510-41144226,
chr21-41146761-41148032,
chr21-41148592-41149430,
chr21-41149841-41150938,
chr21-41151775-41151894,
chr21-41153773-41154330,
chr21-41159227-41159964,
chr21-41165212-41165810,
chr21-41166931-41172082,
chr21-41173473-41173655,
chr21-41177726-41178272,
chr21-41179066-41179600,
chr21-41186135-41187378,
chr21-41196787-41197468,
chr21-41199133-41199869,
chr21-41279309-41286918,
chr21-41303650-41304823,
chr21-41310090-41310814,
chr21-41312700-41313050,
chr21-41315579-41317852,
chr21-41318233-41318586,
chr21-41319164-41319889,
chr21-41320310-41323824,
chr21-41326476-41327101,
chr21-41327841-41328214,
chr21-41328691-41329072,
chr21-41334355-41334993,
chr21-41345041-41345456,
chr21-41346067-41346202,
chr21-41347074-41348539,
chr21-41349571-41350286,
chr21-41350528-41350953,
chr21-41351402-41351758,
chr21-41351961-41352359,
chr21-41355172-41355403,
chr21-41356031-41356141,
chr21-41357146-41357972,
chr21-41358175-41363229,
chr21-41373113-41380866,
chr21-41381134-41381620,
chr21-41381847-41383678,
chr21-41386568-41386813,
chr21-41387809-41388751,
chr21-41388985-41389586,
chr21-41390040-41391268,
chr21-41392802-41395480,
chr21-41396219-41397986,
chr21-41399454-41400168,
chr21-41425596-41431302,
chr21-41431562-41433383,
chr21-41433595-41438072,
chr21-41438421-41440223,
chr21-41440635-41442106,
chr21-41442477-41454571,
chr21-41454845-41457031,
chr21-41457310-41463776,
chr21-41465279-41466074,
chr21-41466276-41469670,
chr21-41470417-41471816,
chr21-41472869-41473818,
chr21-41474341-41474869,
chr21-41499971-41502531,
chr21-41504215-41505004,
chr21-41505347-41509529,
chr21-41509897-41510115,
chr21-41510454-41511185,
chr21-41511910-41512243,
chr21-41512550-41513397,
chr21-41518109-41518579,
chr21-41520133-41522085,
chr21-41523158-41523411,
chr21-41524547-41525042,
chr21-41525661-41526249,
chr21-41526686-41527137,
chr21-41527940-41528857,
chr21-41529157-41529613,
chr21-41529914-41531492,
chr21-41531709-41531968,
chr21-41533651-41533917,
chr21-41535720-41537183,
chr21-41537437-41538094,
chr21-41539474-41540152,
chr21-41541451-41541829,
chr21-41544162-41544406,
chr21-41546008-41546302,
chr21-41547101-41547423,
chr21-41548755-41549570,
chr21-41553049-41553487,
chr21-41554072-41554875,
chr21-41557945-41558223,
chr21-41559705-41561047,
chr21-41561344-41563820,
chr21-41564131-41565320,
chr21-41565654-41566740,
chr21-41567175-41568502,
chr21-41569012-41569286,
chr21-41574001-41574795,
chr21-41576049-41576419,
chr21-41580516-41586056,
chr21-41588945-41589916,
chr21-41590736-41590940,
chr21-41591543-41591866,
chr21-41592562-41593315,
chr21-41596184-41596598,
chr21-41597407-41599450,
chr21-41600668-41607029,
chr21-41607264-41617134,
chr21-41617741-41618159,
chr21-41619036-41619135,
chr21-41620001-41623327,
chr21-41698776-41700406,
chr21-41701336-41702512,
chr21-41703830-41708250,
chr21-41710305-41711418,
chr21-41711706-41713056,
chr21-41713475-41714677,
chr21-41715027-41718311,
chr21-41719102-41720033,
chr21-41720825-41721220,
chr21-41721582-41723534,
chr21-41724219-41724820,
chr21-41725384-41728963,
chr21-41729720-41730717,
chr21-41733728-41735705,
chr21-41736150-41737391,
chr21-41737818-41738231,
chr21-41740057-41742738,
chr21-41743343-41747580,
chr21-41748428-41748917,
chr21-41749162-41749630,
chr21-41750044-41752982,
chr21-41753429-41753815,
chr21-41754380-41755068,
chr21-41755301-41757502,
chr21-41758041-41771900,
chr21-41772125-41773546,
chr21-41774945-41781439,
chr21-41782169-41784881,
chr21-41785377-41785632,
chr21-41785969-41787549,
chr21-41793143-41793460,
chr21-41794325-41795136,
chr21-41796584-41797209,
chr21-41797596-41797844,
chr21-41798299-41798682,
chr21-41799784-41800050,
chr21-41800258-41800436,
chr21-41800941-41801669,
chr21-41801918-41803799,
chr21-41804360-41804854,
chr21-41805059-41805238,
chr21-41805853-41806997,
chr21-41807830-41808572,
chr21-41808928-41810866,
chr21-41811647-41812381,
chr21-41812630-41814016,
chr21-41814372-41823630,
chr21-41823944-41825655,
chr21-41827924-41829367,
chr21-41830742-41836906,
chr21-41837774-41838052,
chr21-41838738-41839946,
chr21-41842489-41843082,
chr21-41844161-41847949,
chr21-41849107-41849386,
chr21-41850983-41851877,
chr21-41852110-41853345,
chr21-41853692-41855866,
chr21-41857229-41860002,
chr21-41861355-41866024,
chr21-41866387-41867228,
chr21-41867863-41869049,
chr21-41871292-41871941,
chr21-41872703-41874138,
chr21-41874717-41875401,
chr21-41898621-41901470,
chr21-41903610-41904218,
chr21-41905344-41905910,
chr21-41907516-41908154,
chr21-41908433-41908738,
chr21-41912525-41913615,
chr21-41913829-41916045,
chr21-41916566-41919291,
chr21-41919607-41924881,
chr21-42072432-42077357,
chr21-42077774-42087507,
chr21-42088172-42088785,
chr21-42089069-42090481,
chr21-42091730-42092368,
chr21-42092772-42095377,
chr21-42096641-42096982,
chr21-42097185-42102518,
chr21-42102731-42103045,
chr21-42103416-42126825,
chr21-42127155-42127810,
chr21-42128488-42129619,
chr21-42130648-42131154,
chr21-42133171-42133790,
chr21-42135118-42136218,
chr21-42136531-42136713,
chr21-42136966-42138370,
chr21-42139645-42142559,
chr21-42143139-42149312,
chr21-42149675-42151617,
chr21-42799515-42801184,
chr21-42801570-42802027,
chr21-42804198-42804619,
chr21-42806323-42807117,
chr21-42807469-42808220,
chr21-42809607-42810029,
chr21-42810534-42811625,
chr21-42812043-42812143,
chr21-42812479-42812787,
chr21-42815294-42815581,
chr21-42816699-42821466,
chr21-43328508-43351938,
chr21-43352261-43357227,
-
Co-expression with cohesin genes Rho = 0.0919
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.826
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.880
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,GM12878,Pancreas,K-562,A-549,HFFc6,HeLa-S3,LNCaP,H1-Trophectoderm,H9-hESC,NCI-H1437,Liver,REC-1,Germinal-Center-B,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,MSLCL,NaiveB,HUVEC,NPC-H9,RT-112,CC-2551,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:33400000-33425000~~chr21:41350000-41375000,
chr21:36525000-36550000~~chr21:41350000-41375000,
chr21:38775000-38800000~~chr21:41350000-41375000,
chr21:39175000-39200000~~chr21:41350000-41375000,
chr21:41125000-41150000~~chr21:41350000-41375000,
chr21:41150000-41175000~~chr21:41350000-41375000,
chr21:41175000-41200000~~chr21:41275000-41300000,
chr21:41275000-41300000~~chr21:41375000-41400000,
chr21:41275000-41300000~~chr21:41425000-41450000,
chr21:41275000-41300000~~chr21:41450000-41475000,
chr21:41275000-41300000~~chr21:41500000-41525000,
chr21:41275000-41300000~~chr21:41525000-41550000,
chr21:41275000-41300000~~chr21:41550000-41575000,
chr21:41275000-41300000~~chr21:41575000-41600000,
chr21:41275000-41300000~~chr21:41600000-41625000,
chr21:41275000-41300000~~chr21:41725000-41750000,
chr21:41275000-41300000~~chr21:41750000-41775000,
chr21:41275000-41300000~~chr21:41775000-41800000,
chr21:41275000-41300000~~chr21:41800000-41825000,
chr21:41275000-41300000~~chr21:41825000-41850000,
chr21:41275000-41300000~~chr21:41900000-41925000,
chr21:41275000-41300000~~chr21:42075000-42100000,
chr21:41275000-41300000~~chr21:42100000-42125000,
chr21:41275000-41300000~~chr21:42125000-42150000,
chr21:41275000-41300000~~chr21:42800000-42825000,
chr21:41282249-41284316~~chr21:41359432-41361272,
chr21:41282253-41284285~~chr21:41359487-41361156,
chr21:41282285-41284324~~chr21:41359525-41361220,
chr21:41282304-41284355~~chr21:41359414-41361284,
chr21:41282471-41284284~~chr21:41359635-41361174,
chr21:41282554-41284321~~chr21:41359636-41362143,
chr21:41300000-41325000~~chr21:41425000-41450000,
chr21:41300000-41325000~~chr21:41450000-41475000,
chr21:41300000-41325000~~chr21:41500000-41525000,
chr21:41300000-41325000~~chr21:41575000-41600000,
chr21:41300000-41325000~~chr21:41600000-41625000,
chr21:41300000-41325000~~chr21:41700000-41725000,
chr21:41300000-41325000~~chr21:41750000-41775000,
chr21:41300000-41325000~~chr21:41775000-41800000,
chr21:41300000-41325000~~chr21:41800000-41825000,
chr21:41300000-41325000~~chr21:41825000-41850000,
chr21:41350000-41375000~~chr21:41450000-41475000,
chr21:41350000-41375000~~chr21:41575000-41600000,
chr21:41350000-41375000~~chr21:41750000-41775000,
chr21:41350000-41375000~~chr21:41850000-41875000,
chr21:41350000-41375000~~chr21:43350000-43375000,
chr21:41361000-41363181~~chr21:41425246-41427778,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, GSE43070, 4DNFIDJ2JZ7Q, ENCSR794RDS, 4DNFIBN9K4V9, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFIRKGMZRQ, GSE99541, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, GSE155380, 4DNFICSTCJQZ, ENCSR452NHL, GSE80820, GSE52457, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIX4PJKXZ, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE58752, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, 4DNFI6EIFUZI, 4DNFII6AN691, 4DNFIV239W4L, 4DNFIOUSETUP, 4DNFI1UEG1HD, GSE101921, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: K-562
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE131448
- Cohesin-DEGs, subunit: SA2