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Basic information

CohesinDB ID: CDBG00015679

Gene Symbol: LINC00315

Ensembl ID: ENSG00000184274

Gene locus: chr21:45300244-45305257 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3127 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.548
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,Olfactory,GM19239,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,OCI-AML-3,HCT-116,Hep-G2,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,U-937,SU-DHL-4,HUVEC,RT-112,Jurkat,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE43070, 4DNFIRZA6EV6, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, ENCSR499RVD, ENCSR794RDS, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR852KQC, 4DNFIPV5KFMK, ENCSR361AYD, ENCSR146FPM, 4DNFIDSWKFF5, 4DNFIZ4F74QR, GSE120294, ENCSR410MDC, ENCSR350NJV, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIA6NSSBJ, 4DNFIBCIA62Q, 4DNFIFHU75I5, GSE111537, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFIHN2QSMX, GSE155380, ENCSR444BAR, ENCSR123UVP, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, GSE80820, ENCSR128RPG, 4DNFISTWNV9C, 4DNFIJ5DQZVK, 4DNFIYWONU7A, ENCSR658RQQ, Direct, GSE165038, ENCSR479MTN, 4DNFIALNLR78, 4DNFIAS8LV1C, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIYIAUEPW, 4DNFIEJEFCAM, ENCSR244BBG, GSE116872, ENCSR393LOP, 4DNFIAWVDQ8C, 4DNFIC3HAU11, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFI7XAZNNQ, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFIP71EWXC, 4DNFIDZT7PR8, 4DNFIS5F6EBL, GSE105028, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000184274