Deatailed information for gene ENSG00000184900
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015820
- Gene Symbol: SUMO3
- Ensembl ID: ENSG00000184900
-
Gene locus: chr21:44805616-44818129
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-42875265-42875657,
chr21-42875983-42876584,
chr21-42876831-42877399,
chr21-42877653-42880442,
chr21-42881000-42881276,
chr21-42881848-42882396,
chr21-42885959-42886266,
chr21-42888778-42889585,
chr21-42890204-42894569,
chr21-42895138-42895610,
chr21-42896014-42896815,
chr21-42897274-42897953,
chr21-42898298-42898649,
chr21-42898938-42900986,
chr21-42971699-42976556,
chr21-42977567-42978245,
chr21-42978524-42979165,
chr21-42979449-42979775,
chr21-42980073-42980693,
chr21-42981060-42983699,
chr21-42984049-42984123,
chr21-42984399-42985953,
chr21-42986206-42987380,
chr21-42987592-42989052,
chr21-42989441-42990324,
chr21-42991464-42993497,
chr21-42993747-42994516,
chr21-42996864-42997865,
chr21-42998695-42999369,
chr21-43328508-43351938,
chr21-43352261-43357227,
chr21-43357471-43370764,
chr21-43371758-43372139,
chr21-43372411-43378616,
chr21-44049059-44050644,
chr21-44051500-44052149,
chr21-44058034-44059019,
chr21-44060331-44060715,
chr21-44061133-44061570,
chr21-44062415-44062878,
chr21-44063088-44064391,
chr21-44065260-44065880,
chr21-44066159-44066445,
chr21-44067082-44068169,
chr21-44069413-44070104,
chr21-44070382-44070916,
chr21-44071581-44073072,
chr21-44074197-44074929,
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44279636-44308260,
chr21-44308534-44320510,
chr21-44320741-44336654,
chr21-44337821-44343795,
chr21-44344069-44346159,
chr21-44347920-44356379,
chr21-44799103-44805501,
chr21-44806825-44807985,
chr21-44808233-44808856,
chr21-44809850-44811758,
chr21-44812135-44814175,
chr21-44814747-44820942,
chr21-44836322-44840030,
chr21-44842094-44850066,
chr21-44862997-44876511,
chr21-44876848-44922035,
chr21-44922496-44936465,
chr21-44937160-44937800,
chr21-44938036-44942579,
chr21-44943111-44946058,
chr21-44946260-44956117,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45316533-45338135,
chr21-45339035-45339421,
chr21-45340328-45340876,
chr21-45341176-45342108,
chr21-45342847-45354233,
chr21-45447735-45461753,
chr21-45463590-45484721,
-
Co-expression with cohesin genes Rho = 0.6304
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.173
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.787
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,GM12892,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,Hep-G2,HT-1197,H1-hESC,Motor-Neuron,GM19238,NaiveB,GM19240,SU-DHL-4,RT-112,Skin-Fibroblast,Jurkat,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:42875000-42900000~~chr21:44800000-44825000,
chr21:42975000-43000000~~chr21:44800000-44825000,
chr21:43350000-43375000~~chr21:44800000-44825000,
chr21:44050000-44075000~~chr21:44800000-44825000,
chr21:44075000-44100000~~chr21:44800000-44825000,
chr21:44300000-44325000~~chr21:44800000-44825000,
chr21:44325000-44350000~~chr21:44800000-44825000,
chr21:44799344-44802391~~chr21:44874408-44876218,
chr21:44799365-44801932~~chr21:44874652-44876234,
chr21:44799372-44802443~~chr21:44874407-44876256,
chr21:44799372-44802443~~chr21:44910613-44912668,
chr21:44799372-44802443~~chr21:44931965-44934113,
chr21:44799392-44802491~~chr21:44931992-44933524,
chr21:44799411-44802024~~chr21:44845318-44847256,
chr21:44799411-44802024~~chr21:44931881-44933864,
chr21:44799420-44802311~~chr21:44874548-44876442,
chr21:44799435-44802625~~chr21:44836063-44837863,
chr21:44799443-44802060~~chr21:44931925-44933520,
chr21:44799602-44802376~~chr21:44931909-44933980,
chr21:44799651-44802591~~chr21:44845216-44847176,
chr21:44799686-44802514~~chr21:44931456-44933916,
chr21:44799696-44802591~~chr21:44910581-44912708,
chr21:44799696-44802591~~chr21:44931870-44933936,
chr21:44799706-44802994~~chr21:44930823-44933918,
chr21:44799726-44802540~~chr21:44845295-44847056,
chr21:44799726-44802540~~chr21:44873123-44876204,
chr21:44800000-44825000~~chr21:44900000-44925000,
chr21:44800000-44825000~~chr21:44925000-44950000,
chr21:44800000-44825000~~chr21:45125000-45150000,
chr21:44800000-44825000~~chr21:45325000-45350000,
chr21:44800000-44825000~~chr21:45450000-45475000,
chr21:44800017-44802385~~chr21:44874479-44876246,
chr21:44800017-44802385~~chr21:44910606-44912868,
chr21:44800017-44802385~~chr21:44930976-44933923,
chr21:44800406-44801881~~chr21:44911198-44912387,
chr21:44800498-44802680~~chr21:44931107-44933966,
chr21:44800563-44802483~~chr21:44931469-44933956,
chr21:44800595-44801781~~chr21:44931962-44933491,
chr21:44816840-44819191~~chr21:44845055-44847370,
chr21:44817582-44819008~~chr21:44845213-44846787,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR662QKG, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, GSE84022, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIBM714BP, ENCSR668RDP, ENCSR381DCY, GSE155380, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR752QCX, GSE80820, 4DNFIE8T8JZ8, ENCSR128RPG, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR312TUD, ENCSR299VMZ, Direct, ENCSR479MTN, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, GSE101921, 4DNFII84FBKM, 4DNFIYIAUEPW, 4DNFIEJEFCAM, ENCSR244BBG, ENCSR393LOP, 4DNFI9815EEJ, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR255XYX, ENCSR404HWQ, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, ENCSR527RXH, 4DNFIDKJFK2S, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIFLJLIS5, ENCSR094EIC, GSE105028, 4DNFIH7TH4MF, ENCSR033GUP
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: P3HR-1,K-562,MCF-10A,U2OS,HeLa-S3
- Cohesin-DEGs, number of studies: 6
- Cohesin-DEGs, study: GSE140651,GSE154086,GSE131448,GSE89799,GSE130558
- Cohesin-DEGs, subunit: WAPL,SMC1,Rad21,SA2