Deatailed information for gene ENSG00000185186

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  • Basic information
  • CohesinDB ID: CDBG00015903
  • Gene Symbol: LINC00313
  • Ensembl ID: ENSG00000185186
  • Gene locus: chr21:43466727-43478270 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2185 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.579
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,K-562,KBM-7,H1-hESC,HAP1,CyT49-pancreatic,HFFc6,HeLa-S3
  • Related loop: chr21:43350000-43375000~~chr21:43475000-43500000, chr21:43475000-43500000~~chr21:43600000-43625000, chr21:43475000-43500000~~chr21:43625000-43650000, chr21:6025000-6050000~~chr21:43475000-43500000, chr21:6050000-6075000~~chr21:43450000-43475000, chr21:6075000-6100000~~chr21:43450000-43475000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI1E6NJQJ, 4DNFI9815EEJ, 4DNFIHKWIZ9T, 4DNFIQYQWPF5, 4DNFIT96Z365, Direct, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFIFLJLIS5, 4DNFI1UEG1HD, 4DNFI5SUHCGZ, 4DNFII84FBKM, 4DNFICEGAHRC, ENCSR410MDC
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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