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Basic information

CohesinDB ID: CDBG00015964

Gene Symbol: LINC00158

Ensembl ID: ENSG00000185433

Gene locus: chr21:25385819-25431701 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1787 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.867
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,GM12892,K1,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,iPSC,REC-1,ARPE-19,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,NaiveB,GM19240,HUES64,SU-DHL-4,CyT49-hESC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR305RTT, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR361AYD, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, GSE80820, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR312TUD, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFII84FBKM, GSE116872, 4DNFIEJEFCAM, GSE48592, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR110JOO, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIZGCA8AH, GSE105028, 4DNFIH7TH4MF, ENCSR033GUP

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

Tools:

Assay

refGene

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LINC00158 gene locus

LINC00158 related cohesin sites

LINC00158 related cohesin loop

Deatailed information for gene ENSG00000185433

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