Deatailed information for gene ENSG00000185433
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00015964
- Gene Symbol: LINC00158
- Ensembl ID: ENSG00000185433
-
Gene locus: chr21:25385819-25431701
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1787
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.867
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,GM12892,K1,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,iPSC,REC-1,ARPE-19,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,NaiveB,GM19240,HUES64,SU-DHL-4,CyT49-hESC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,HFF-hTERT,HAP1
- Related loop:
chr21:18275000-18300000~~chr21:25375000-25400000,
chr21:21000000-21025000~~chr21:25375000-25400000,
chr21:21150000-21175000~~chr21:25375000-25400000,
chr21:22350000-22375000~~chr21:25375000-25400000,
chr21:23125000-23150000~~chr21:25375000-25400000,
chr21:24513423-24515010~~chr21:25384975-25387237,
chr21:24513697-24514874~~chr21:25385247-25387032,
chr21:24550000-24575000~~chr21:25375000-25400000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24894830-24897390~~chr21:25384467-25387269,
chr21:24894830-24897394~~chr21:25385024-25387052,
chr21:24895217-24897409~~chr21:25384906-25387309,
chr21:24895246-24897306~~chr21:25385187-25387188,
chr21:24895257-24897346~~chr21:25384844-25387316,
chr21:24895401-24897292~~chr21:25385277-25387061,
chr21:24895404-24897444~~chr21:25384540-25387027,
chr21:24895412-24897374~~chr21:25384467-25386981,
chr21:24895417-24897339~~chr21:25385234-25387033,
chr21:24895431-24897366~~chr21:25384794-25387223,
chr21:24895435-24897297~~chr21:25385320-25387052,
chr21:24895436-24897312~~chr21:25385038-25387061,
chr21:24895454-24897362~~chr21:25385185-25387028,
chr21:24895510-24897368~~chr21:25384420-25387034,
chr21:24895582-24897226~~chr21:25384605-25386845,
chr21:24900000-24925000~~chr21:25375000-25400000,
chr21:25025000-25050000~~chr21:25375000-25400000,
chr21:25038878-25040962~~chr21:25384794-25387223,
chr21:25038960-25041269~~chr21:25384420-25387034,
chr21:25050000-25075000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25275000-25300000~~chr21:25375000-25400000,
chr21:25282035-25284813~~chr21:25385187-25387188,
chr21:25282774-25284961~~chr21:25384973-25387124,
chr21:25282884-25285002~~chr21:25384844-25387316,
chr21:25282903-25284758~~chr21:25385202-25387023,
chr21:25282928-25284802~~chr21:25384906-25387309,
chr21:25283150-25284658~~chr21:25385262-25387043,
chr21:25349142-25351714~~chr21:25384975-25387237,
chr21:25349194-25351726~~chr21:25385187-25387188,
chr21:25349223-25351193~~chr21:25385202-25387023,
chr21:25349228-25351734~~chr21:25384973-25387124,
chr21:25349249-25351723~~chr21:25385057-25387036,
chr21:25349307-25351726~~chr21:25385207-25387036,
chr21:25349328-25351256~~chr21:25385367-25387046,
chr21:25349357-25351711~~chr21:25384906-25387309,
chr21:25349579-25351235~~chr21:25385229-25387028,
chr21:25375000-25400000~~chr21:25725000-25750000,
chr21:25375000-25400000~~chr21:26825000-26850000,
chr21:25400000-25425000~~chr21:25550000-25575000,
chr21:25400000-25425000~~chr21:25575000-25600000,
chr21:25400000-25425000~~chr21:25600000-25625000,
chr21:25400000-25425000~~chr21:25700000-25725000,
chr21:25400000-25425000~~chr21:25725000-25750000,
chr21:25400000-25425000~~chr21:25775000-25800000,
chr21:25400000-25425000~~chr21:26150000-26175000,
chr21:25420529-25422993~~chr21:25566907-25568446,
chr21:25420529-25422993~~chr21:25606735-25609548,
chr21:25420540-25423403~~chr21:25560910-25563164,
chr21:25420540-25423403~~chr21:25606733-25609495,
chr21:25420678-25422766~~chr21:25560847-25563165,
chr21:25420678-25422766~~chr21:25573354-25574752,
chr21:25420712-25422853~~chr21:25560936-25563164,
chr21:25420779-25423371~~chr21:25560899-25563117,
chr21:25420779-25423371~~chr21:25566872-25568350,
chr21:25420779-25423371~~chr21:25606803-25609752,
chr21:25420786-25422730~~chr21:25455832-25458166,
chr21:25420786-25422730~~chr21:25559998-25563081,
chr21:25420786-25422730~~chr21:25566885-25568380,
chr21:25420827-25422906~~chr21:25566845-25568434,
chr21:25420827-25422906~~chr21:25576959-25578131,
chr21:25420833-25423377~~chr21:25559917-25563022,
chr21:25420835-25423361~~chr21:25560463-25563063,
chr21:25420835-25423361~~chr21:25567081-25568291,
chr21:25420881-25422831~~chr21:25566913-25568404,
chr21:25420881-25422831~~chr21:25606865-25609546,
chr21:25420903-25423353~~chr21:25567034-25568326,
chr21:25420928-25423279~~chr21:25561015-25562774,
chr21:25420928-25423279~~chr21:25567075-25568299,
chr21:25420945-25422989~~chr21:25561564-25562715,
chr21:25421193-25422730~~chr21:25606816-25609496,
chr21:25421231-25422782~~chr21:25861820-25863486,
chr21:25423746-25424928~~chr21:25455834-25458451,
chr21:25423746-25424928~~chr21:25560899-25563117,
chr21:25425000-25450000~~chr21:25550000-25575000,
chr21:25425000-25450000~~chr21:25700000-25725000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR305RTT, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR361AYD, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, GSE80820, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR312TUD, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFII84FBKM, GSE116872, 4DNFIEJEFCAM, GSE48592, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR110JOO, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIZGCA8AH, GSE105028, 4DNFIH7TH4MF, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .