Deatailed information for gene ENSG00000185658
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00016018
- Gene Symbol: BRWD1
- Ensembl ID: ENSG00000185658
-
Gene locus: chr21:39184175-39313819
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,DEGs,
- Regulatory cohesin (double-evidenced):
chr21-37848590-37851352,
chr21-37851997-37852496,
chr21-37854587-37856602,
chr21-37858133-37858424,
chr21-37862475-37863023,
chr21-37863574-37864405,
chr21-37865357-37865570,
chr21-37865868-37866779,
chr21-37868675-37872241,
chr21-37873511-37874441,
chr21-37874747-37875524,
chr21-38498193-38500425,
chr21-38501041-38501534,
chr21-38503073-38508323,
chr21-38509890-38510117,
chr21-38510943-38512229,
chr21-38512754-38513121,
chr21-38519985-38520039,
chr21-38520552-38520872,
chr21-38524127-38524519,
chr21-38524820-38525118,
chr21-38800466-38816528,
chr21-38816889-38818881,
chr21-38819201-38823342,
chr21-38823665-38827360,
chr21-39178845-39179222,
chr21-39180628-39180930,
chr21-39181962-39185522,
chr21-39189884-39190456,
chr21-39203404-39203730,
chr21-39204248-39204463,
chr21-39205366-39206009,
chr21-39208500-39209259,
chr21-39214963-39215242,
chr21-39215761-39216148,
chr21-39219118-39219418,
chr21-39221650-39221894,
chr21-39224700-39225233,
chr21-39227967-39228342,
chr21-39230638-39230782,
chr21-39233710-39233982,
chr21-39235801-39236518,
chr21-39244018-39244348,
chr21-39246748-39247115,
chr21-39249901-39249966,
chr21-39252986-39253270,
chr21-39253984-39254262,
chr21-39255116-39255423,
chr21-39256405-39256725,
chr21-39259322-39259752,
chr21-39262393-39262650,
chr21-39271032-39271717,
chr21-39274274-39274338,
chr21-39277603-39278116,
chr21-39281318-39282039,
chr21-39289740-39290081,
chr21-39295098-39295553,
chr21-39301995-39302301,
chr21-39303859-39304491,
chr21-39305444-39305836,
chr21-39306051-39306835,
chr21-39308133-39308430,
chr21-39308844-39309885,
chr21-39311213-39311463,
chr21-39311834-39323454,
chr21-39323856-39324540,
chr21-39344676-39351972,
chr21-39354073-39354700,
chr21-39359443-39359751,
chr21-39362398-39362789,
chr21-39363116-39364202,
chr21-39368147-39369223,
chr21-39369691-39371112,
chr21-39372448-39374699,
chr21-39377536-39378376,
chr21-39378615-39382320,
chr21-39383016-39384062,
chr21-39384730-39386685,
chr21-39386888-39390967,
chr21-39395561-39395853,
chr21-39396172-39397021,
chr21-39398076-39398420,
chr21-39398702-39399019,
chr21-39402135-39402399,
chr21-39403382-39403965,
chr21-39404418-39404728,
chr21-39405210-39405509,
chr21-39409531-39409809,
chr21-39412553-39413050,
chr21-39413873-39414796,
chr21-39417782-39417992,
chr21-39419242-39419515,
chr21-39420248-39420774,
chr21-39421127-39421401,
chr21-39422232-39423256,
chr21-39424092-39424501,
chr21-39425591-39426058,
chr21-39427352-39427664,
chr21-39430503-39430780,
chr21-39431574-39431827,
chr21-39435612-39435881,
chr21-39436505-39436763,
chr21-39440305-39444075,
chr21-39444581-39446444,
chr21-39447001-39447710,
chr21-39601006-39602588,
chr21-39604265-39605410,
chr21-39607665-39608007,
chr21-39608787-39609235,
chr21-39609628-39615120,
chr21-39616321-39616816,
chr21-39625225-39625791,
chr21-39629704-39632293,
chr21-39632853-39634794,
chr21-39636297-39636947,
chr21-39637455-39637794,
chr21-39638015-39640435,
chr21-39641876-39642112,
chr21-39642413-39642648,
chr21-39643132-39643834,
chr21-39644110-39644390,
chr21-39647406-39650769,
chr21-39652021-39652489,
chr21-39655291-39655839,
chr21-39656185-39657598,
chr21-39657848-39658299,
chr21-39660012-39662667,
chr21-39663746-39664966,
chr21-39666204-39668198,
chr21-39668545-39670696,
chr21-39673143-39674204,
chr21-39674626-39675258,
chr21-39699714-39700227,
chr21-39701576-39703321,
chr21-39704596-39707757,
chr21-39709616-39710268,
chr21-39710803-39711977,
chr21-39712178-39719074,
chr21-39720460-39720773,
chr21-39721276-39722005,
chr21-39723416-39724008,
-
Co-expression with cohesin genes Rho = 0.6932
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.202
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.900
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,GM12892,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,NCI-H1437,Liver,OCI-AML-3,Hep-G2,HT-1197,H1-hESC,HT-1376,MSLCL,U-937,SU-DHL-4,Skin-Fibroblast,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:25725000-25750000~~chr21:39175000-39200000,
chr21:27500000-27525000~~chr21:39275000-39300000,
chr21:29050000-29075000~~chr21:39175000-39200000,
chr21:31650000-31675000~~chr21:39175000-39200000,
chr21:31675000-31700000~~chr21:39175000-39200000,
chr21:34350000-34375000~~chr21:39175000-39200000,
chr21:36150000-36175000~~chr21:39175000-39200000,
chr21:36300000-36325000~~chr21:39175000-39200000,
chr21:37850000-37875000~~chr21:39175000-39200000,
chr21:38500000-38525000~~chr21:39175000-39200000,
chr21:38800000-38825000~~chr21:39175000-39200000,
chr21:39175000-39200000~~chr21:39350000-39375000,
chr21:39175000-39200000~~chr21:39375000-39400000,
chr21:39175000-39200000~~chr21:39400000-39425000,
chr21:39175000-39200000~~chr21:39425000-39450000,
chr21:39175000-39200000~~chr21:39625000-39650000,
chr21:39175000-39200000~~chr21:39650000-39675000,
chr21:39175000-39200000~~chr21:41350000-41375000,
chr21:39175000-39200000~~chr21:41625000-41650000,
chr21:39181797-39184674~~chr21:39387575-39389929,
chr21:39181825-39184679~~chr21:39387575-39389540,
chr21:39182329-39184669~~chr21:39379584-39381389,
chr21:39182808-39184692~~chr21:39387267-39389644,
chr21:39200000-39225000~~chr21:39300000-39325000,
chr21:39200000-39225000~~chr21:39375000-39400000,
chr21:39200000-39225000~~chr21:39400000-39425000,
chr21:39200000-39225000~~chr21:39425000-39450000,
chr21:39200000-39225000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39375000-39400000,
chr21:39225000-39250000~~chr21:39400000-39425000,
chr21:39225000-39250000~~chr21:39425000-39450000,
chr21:39225000-39250000~~chr21:39600000-39625000,
chr21:39225000-39250000~~chr21:39700000-39725000,
chr21:39275000-39300000~~chr21:39375000-39400000,
chr21:39275000-39300000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39400000-39425000,
chr21:39300000-39325000~~chr21:39425000-39450000,
chr21:39300000-39325000~~chr21:39600000-39625000,
chr21:39300000-39325000~~chr21:39700000-39725000,
chr21:39311821-39314792~~chr21:39387238-39389498,
chr21:39311959-39313102~~chr21:39387388-39389691,
chr21:39313200-39315343~~chr21:39347346-39350688,
chr21:39313200-39315343~~chr21:39387575-39389929,
chr21:39313201-39315232~~chr21:39347651-39350715,
chr21:39313201-39315232~~chr21:39387637-39389565,
chr21:39313213-39315341~~chr21:39347106-39349452,
chr21:39313213-39315341~~chr21:39387404-39390232,
chr21:39313217-39315223~~chr21:39347655-39350638,
chr21:39313217-39315223~~chr21:39387388-39389691,
chr21:39313225-39315438~~chr21:39347557-39350333,
chr21:39313225-39315438~~chr21:39387253-39389877,
chr21:39313233-39315495~~chr21:39387267-39389644,
chr21:39313238-39315302~~chr21:39387310-39389980,
chr21:39313242-39315444~~chr21:39387521-39389890,
chr21:39313251-39315395~~chr21:39387315-39389934,
chr21:39313256-39315329~~chr21:39387268-39389940,
chr21:39313256-39315481~~chr21:39387441-39389598,
chr21:39313266-39314748~~chr21:39387578-39389687,
chr21:39313272-39315384~~chr21:39387528-39389909,
chr21:39313277-39315384~~chr21:39387326-39389699,
chr21:39313325-39314705~~chr21:39387024-39389430,
chr21:39313325-39315275~~chr21:39387259-39389666,
chr21:39313366-39315422~~chr21:39387902-39389468,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIHMCILEN, 4DNFIWZEN3FF, 4DNFIBRSIPE4, GSE43070, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIMROE6N4, ENCSR499RVD, 4DNFIB7QTIMH, GSE108787, 4DNFI5SUHCGZ, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIP25GZGA, ENCSR732QOH, 4DNFIBM714BP, 4DNFIYD8LO9Z, GSE99541, GSE111537, ENCSR668RDP, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIIMZB6Y9, GSE80820, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIAS8LV1C, GSE165038, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI6JJQKFJ, 4DNFI8Y9SRP2, 4DNFII84FBKM, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR255XYX, ENCSR000FDB, 4DNFI9ZWZ5BS, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIFLJLIS5, 4DNFIZGCA8AH, GSE105028, GSE58752, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: True
-
Involved cell types for DEG evidence: HPC,SLK,K-562,CMK,U2OS,HeLa-S3,Keratinocytes
- Cohesin-DEGs, number of studies: 11
- Cohesin-DEGs, study: GSE89799,GSE83870,GSE119828,GSE154086,GSE131448,GSE138937,GSE108869,GSE130558
- Cohesin-DEGs, subunit: SMC3,SA2,WAPL,CTCF,SMC1,Rad21,CdLS