Deatailed information for gene ENSG00000185808

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  • Basic information
  • CohesinDB ID: CDBG00016055
  • Gene Symbol: PIGP
  • Ensembl ID: ENSG00000185808
  • Gene locus: chr21:37062845-37072811 Strand: -
  • Gene type: protein_coding
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.6172 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.215
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: IMR-90,MB157,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12878,K-562,A-549,HeLa-S3,H9-hESC,REC-1,Hep-G2,H1-hESC,Motor-Neuron,NaiveB,RT-112,HFF-hTERT,HAP1,MCF7-FASR
  • Related loop: chr21:34350000-34375000~~chr21:37050000-37075000, chr21:36400000-36425000~~chr21:37075000-37100000, chr21:36725000-36750000~~chr21:37050000-37075000, chr21:36950000-36975000~~chr21:37050000-37075000, chr21:36950000-36975000~~chr21:37075000-37100000, chr21:36975000-37000000~~chr21:37075000-37100000, chr21:36989121-36991424~~chr21:37071179-37074846, chr21:37050000-37075000~~chr21:37250000-37275000, chr21:37050000-37075000~~chr21:37525000-37550000,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE116875, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, GSE108787, GSE116869, GSE120294, ENCSR852KQC, GSE84022, 4DNFIW8TIFI5, 4DNFI7H4II2V, ENCSR410MDC, ENCSR350NJV, 4DNFIYD8LO9Z, ENCSR381DCY, GSE155380, 4DNFIV239W4L, GSE52457, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFI1UEG1HD, GSE108869, ENCSR244BBG, GSE44267, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, 4DNFIHN2QSMX, 4DNFIH7TH4MF
  • Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence: P3HR-1
  • Cohesin-DEGs, number of studies: 1
  • Cohesin-DEGs, study: GSE140651
  • Cohesin-DEGs, subunit: SMC1
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