Deatailed information for gene ENSG00000185917
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00016090
- Gene Symbol: SETD4
- Ensembl ID: ENSG00000185917
-
Gene locus: chr21:36043685-36079389
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
chr21-34330025-34330426,
chr21-34332972-34333971,
chr21-34334498-34338506,
chr21-34339763-34340385,
chr21-34340726-34341087,
chr21-34341939-34344393,
chr21-34344734-34353465,
chr21-34355390-34355626,
chr21-34356201-34356732,
chr21-34360486-34364137,
chr21-34364518-34364800,
chr21-34365500-34365847,
chr21-34366487-34368638,
chr21-34369248-34369608,
chr21-34371955-34372730,
chr21-34373717-34374267,
chr21-34374742-34376256,
chr21-34501761-34502015,
chr21-34504010-34504283,
chr21-34504884-34505791,
chr21-34506232-34507063,
chr21-34508107-34513689,
chr21-34514406-34516103,
chr21-34516659-34519824,
chr21-34520257-34523372,
chr21-34523800-34530931,
chr21-34675632-34675953,
chr21-34678012-34678345,
chr21-34679678-34680290,
chr21-34682805-34683058,
chr21-34686036-34686398,
chr21-34686620-34687085,
chr21-34687732-34691121,
chr21-34692147-34696282,
chr21-34697770-34698335,
chr21-34699934-34700500,
chr21-34701028-34701356,
chr21-34701621-34704879,
chr21-34705086-34705452,
chr21-34707476-34708390,
chr21-34710392-34710772,
chr21-34712749-34713096,
chr21-34715391-34715920,
chr21-34716204-34717951,
chr21-34718434-34718803,
chr21-34719317-34720422,
chr21-34720656-34720985,
chr21-34721618-34723787,
chr21-34725242-34725570,
chr21-34726071-34727333,
chr21-34728212-34729038,
chr21-34730375-34730967,
chr21-34732355-34732995,
chr21-34733994-34735235,
chr21-34735958-34737524,
chr21-34738288-34738793,
chr21-34739066-34739372,
chr21-34742264-34742467,
chr21-34742716-34748790,
chr21-34749135-34749722,
chr21-34751020-34751293,
chr21-34752619-34752901,
chr21-34753274-34753506,
chr21-34754481-34755013,
chr21-34757731-34758027,
chr21-34758515-34759013,
chr21-34760153-34761814,
chr21-34762657-34763171,
chr21-34763900-34764522,
chr21-34766828-34767249,
chr21-34768144-34768932,
chr21-34769376-34769684,
chr21-34771496-34772035,
chr21-34772749-34773133,
chr21-34774437-34775227,
chr21-34800219-34800622,
chr21-34800864-34803584,
chr21-34803861-34805114,
chr21-34806718-34810175,
chr21-34810714-34811564,
chr21-34812265-34817307,
chr21-34817535-34820582,
chr21-34821788-34822030,
chr21-34822893-34823796,
chr21-34826496-34828171,
chr21-34830533-34831199,
chr21-34832157-34832670,
chr21-34833081-34847342,
chr21-34847624-34848884,
chr21-34849980-34869247,
chr21-34870048-34873238,
chr21-34874329-34876263,
chr21-34876603-34893358,
chr21-34894062-34895143,
chr21-34895350-34895823,
chr21-34897971-34898224,
chr21-35025268-35030343,
chr21-35030618-35031406,
chr21-35034190-35035022,
chr21-35035550-35039035,
chr21-35039690-35041679,
chr21-35042107-35054875,
chr21-35196740-35200400,
chr21-35200950-35209885,
chr21-35211918-35213403,
chr21-35215746-35216115,
chr21-35216589-35221378,
chr21-35221773-35224106,
chr21-35249249-35250292,
chr21-35252607-35260143,
chr21-35261735-35262939,
chr21-35264418-35267579,
chr21-35268268-35268825,
chr21-35273218-35273904,
chr21-35274166-35275146,
chr21-35397987-35402508,
chr21-35402763-35403675,
chr21-35403878-35404147,
chr21-35404397-35406208,
chr21-35407306-35409284,
chr21-35409547-35410796,
chr21-35411186-35412282,
chr21-35417009-35417597,
chr21-35420540-35421545,
chr21-35423373-35425369,
chr21-35500853-35500970,
chr21-35503483-35504812,
chr21-35505097-35505408,
chr21-35505813-35513273,
chr21-35517685-35518236,
chr21-35520216-35522630,
chr21-35524410-35526641,
chr21-35573981-35576315,
chr21-35576556-35580249,
chr21-35580481-35581036,
chr21-35582951-35583183,
chr21-35583700-35584248,
chr21-35585360-35587069,
chr21-35589326-35589724,
chr21-35592466-35593947,
chr21-35597811-35598021,
chr21-35598644-35598993,
chr21-35624757-35626689,
chr21-35628178-35628897,
chr21-35629217-35629728,
chr21-35630432-35630582,
chr21-35632706-35633020,
chr21-35633468-35633807,
chr21-35634449-35638495,
chr21-35640341-35642547,
chr21-35642894-35644306,
chr21-35646507-35647140,
chr21-35648338-35649581,
chr21-35674767-35675879,
chr21-35676305-35677960,
chr21-35678421-35678743,
chr21-35682002-35682639,
chr21-35689118-35689420,
chr21-35692963-35693500,
chr21-35695103-35695376,
chr21-35696722-35697834,
chr21-35699740-35699793,
chr21-35826438-35826754,
chr21-35829136-35829658,
chr21-35831642-35832191,
chr21-35833310-35833627,
chr21-35834021-35834863,
chr21-35835452-35836190,
chr21-35836412-35837584,
chr21-35837818-35843127,
chr21-35843830-35845505,
chr21-35849614-35851658,
chr21-35852978-35854102,
chr21-35855138-35855885,
chr21-35857491-35857818,
chr21-35861535-35862042,
chr21-35873964-35875028,
chr21-35876342-35877056,
chr21-35878383-35879234,
chr21-35881504-35881774,
chr21-35882770-35883222,
chr21-35886116-35887366,
chr21-35895668-35896317,
chr21-35897676-35898408,
chr21-35899150-35899522,
chr21-35924668-35926278,
chr21-35927378-35927659,
chr21-35931956-35934271,
chr21-35938558-35942713,
chr21-35946138-35946776,
chr21-35953385-35954030,
chr21-35955470-35955692,
chr21-35958505-35958939,
chr21-35963973-35964518,
chr21-35965837-35967157,
chr21-35968775-35968887,
chr21-35974854-35975595,
chr21-36038529-36039078,
chr21-36039809-36040296,
chr21-36040874-36041598,
chr21-36044044-36044355,
chr21-36044664-36044983,
chr21-36045207-36046298,
chr21-36047110-36047488,
chr21-36048486-36048822,
chr21-36050139-36050464,
chr21-36050926-36051294,
chr21-36052795-36053372,
chr21-36053850-36054250,
chr21-36054492-36054982,
chr21-36056537-36057152,
chr21-36058249-36058686,
chr21-36059201-36061295,
chr21-36063224-36064357,
chr21-36064608-36066514,
chr21-36069428-36070759,
chr21-36071001-36071885,
chr21-36072481-36072892,
chr21-36073158-36073998,
chr21-36076454-36076702,
chr21-36076908-36077195,
chr21-36077435-36078090,
chr21-36078788-36079629,
chr21-36079847-36080911,
chr21-36082978-36083967,
chr21-36103438-36103780,
chr21-36104103-36105761,
chr21-36111138-36114564,
chr21-36175175-36175489,
chr21-36175944-36176604,
chr21-36176844-36177305,
chr21-36178285-36178970,
chr21-36180358-36184886,
chr21-36185489-36190732,
chr21-36191345-36191818,
chr21-36192532-36196146,
chr21-36196672-36199361,
chr21-36199941-36200843,
chr21-36201956-36204277,
chr21-36204496-36205970,
chr21-36207279-36213059,
chr21-36213261-36213784,
chr21-36215461-36216010,
chr21-36220646-36222170,
chr21-36224193-36224492,
-
Co-expression with cohesin genes Rho = 0.5178
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.252
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.867
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,MB157,K1,MCF-7,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,NCI-H1437,HCT-116,Hep-G2,HT-1197,H1-hESC,HCC1599,HT-1376,Motor-Neuron,HUES64,HUVEC,HL-60,RT-112,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:33900000-33925000~~chr21:36025000-36050000,
chr21:34325000-34350000~~chr21:36075000-36100000,
chr21:34350000-34375000~~chr21:36025000-36050000,
chr21:34350000-34375000~~chr21:36050000-36075000,
chr21:34350000-34375000~~chr21:36075000-36100000,
chr21:34500000-34525000~~chr21:36025000-36050000,
chr21:34675000-34700000~~chr21:36025000-36050000,
chr21:34700000-34725000~~chr21:36025000-36050000,
chr21:34725000-34750000~~chr21:36025000-36050000,
chr21:34750000-34775000~~chr21:36025000-36050000,
chr21:34800000-34825000~~chr21:36025000-36050000,
chr21:34825000-34850000~~chr21:36025000-36050000,
chr21:34850000-34875000~~chr21:36025000-36050000,
chr21:34875000-34900000~~chr21:36025000-36050000,
chr21:35025000-35050000~~chr21:36025000-36050000,
chr21:35200000-35225000~~chr21:36025000-36050000,
chr21:35250000-35275000~~chr21:36025000-36050000,
chr21:35400000-35425000~~chr21:36025000-36050000,
chr21:35500000-35525000~~chr21:36025000-36050000,
chr21:35575000-35600000~~chr21:36025000-36050000,
chr21:35625000-35650000~~chr21:36025000-36050000,
chr21:35675000-35700000~~chr21:36025000-36050000,
chr21:35825000-35850000~~chr21:36025000-36050000,
chr21:35850000-35875000~~chr21:36025000-36050000,
chr21:35875000-35900000~~chr21:36025000-36050000,
chr21:35925000-35950000~~chr21:36025000-36050000,
chr21:35950000-35975000~~chr21:36075000-36100000,
chr21:36038258-36039755~~chr21:36103947-36105791,
chr21:36045268-36046896~~chr21:36112056-36113996,
chr21:36050000-36075000~~chr21:36200000-36225000,
chr21:36052399-36053789~~chr21:36111955-36113883,
chr21:36058447-36061428~~chr21:36111897-36113834,
chr21:36059236-36061877~~chr21:36111989-36114651,
chr21:36059285-36061312~~chr21:36104007-36105819,
chr21:36059285-36061312~~chr21:36112056-36113996,
chr21:36059311-36061185~~chr21:36103004-36105170,
chr21:36059311-36061185~~chr21:36112033-36114031,
chr21:36059312-36061200~~chr21:36104038-36105851,
chr21:36059347-36061711~~chr21:36102970-36104752,
chr21:36059348-36061289~~chr21:36103921-36105755,
chr21:36059348-36061289~~chr21:36112009-36113920,
chr21:36059365-36061258~~chr21:36112039-36113944,
chr21:36059394-36061226~~chr21:36112056-36114424,
chr21:36059613-36061297~~chr21:36103944-36105869,
chr21:36069440-36070708~~chr21:36112102-36113990,
chr21:36075000-36100000~~chr21:36175000-36200000,
chr21:36075000-36100000~~chr21:38250000-38275000,
chr21:7800000-7825000~~chr21:36025000-36050000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, ENCSR662QKG, GSE95015, GSE94872, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, ENCSR499RVD, ENCSR794RDS, GSE116869, 4DNFI5SUHCGZ, ENCSR545YBD, GSE120294, 4DNFIZ4F74QR, ENCSR410MDC, ENCSR350NJV, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, ENCSR478BMT, 4DNFIBM714BP, 4DNFIYD8LO9Z, ENCSR668RDP, GSE131580, 4DNFIBXWIH8J, GSE155380, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR123UVP, GSE97394, ENCSR587DSF, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, ENCSR550JLK, 4DNFI3A3VYWU, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI6JJQKFJ, GSE101921, 4DNFIK61ILGM, GSE116872, 4DNFIEJEFCAM, ENCSR244BBG, ENCSR255XYX, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, ENCSR933UZH, ENCSR833CMG, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, ENCSR094EIC, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: SLK
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE138937
- Cohesin-DEGs, subunit: CTCF,Rad21