Deatailed information for gene ENSG00000186866
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00016325
- Gene Symbol: POFUT2
- Ensembl ID: ENSG00000186866
-
Gene locus: chr21:45263927-45287898
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
chr21-44077348-44077570,
chr21-44078553-44078867,
chr21-44079138-44079687,
chr21-44081500-44084368,
chr21-44084897-44085581,
chr21-44086043-44086366,
chr21-44086762-44089972,
chr21-44090357-44091197,
chr21-44093882-44094111,
chr21-44094969-44096191,
chr21-44922496-44936465,
chr21-44937160-44937800,
chr21-44938036-44942579,
chr21-44943111-44946058,
chr21-44946260-44956117,
chr21-44956348-44960682,
chr21-44962017-44963405,
chr21-44964360-44974179,
chr21-44974593-45005352,
chr21-45124436-45132048,
chr21-45132786-45143934,
chr21-45145219-45145603,
chr21-45145953-45146151,
chr21-45147401-45149408,
chr21-45150033-45150257,
chr21-45150601-45151290,
chr21-45151534-45152963,
chr21-45153404-45154346,
chr21-45154600-45155466,
chr21-45155889-45157161,
chr21-45157471-45158352,
chr21-45159622-45160462,
chr21-45161033-45162644,
chr21-45163388-45165275,
chr21-45167498-45168102,
chr21-45168865-45169440,
chr21-45169768-45170044,
chr21-45171104-45171438,
chr21-45172537-45173124,
chr21-45174479-45174770,
chr21-45251073-45259845,
chr21-45261057-45263926,
chr21-45264207-45270973,
chr21-45276631-45278067,
chr21-45278276-45280924,
chr21-45281215-45285084,
chr21-45285295-45286241,
chr21-45286477-45297005,
chr21-45299162-45312040,
chr21-45401908-45445613,
chr21-45447735-45461753,
chr21-45463590-45484721,
chr21-45549738-45561026,
chr21-45562524-45563196,
chr21-45569935-45572811,
chr21-45573733-45582416,
chr21-45799954-45801669,
chr21-45801901-45802870,
chr21-45803374-45804235,
chr21-45804566-45806380,
chr21-45809423-45809839,
chr21-45810206-45810279,
chr21-45811128-45811479,
chr21-45812475-45812693,
chr21-45813685-45816501,
chr21-45816934-45824027,
chr21-45824560-45825827,
chr21-45826840-45830627,
chr21-45830839-45831391,
chr21-45831779-45832772,
chr21-45833478-45836709,
chr21-45837172-45837882,
chr21-45844115-45844699,
chr21-45845305-45846222,
chr21-45846697-45847005,
chr21-45847320-45849116,
chr21-45877568-45881967,
chr21-46141781-46148753,
-
Co-expression with cohesin genes Rho = 0.5475
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.356
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.790
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,SU-DHL-4,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:44075000-44100000~~chr21:45250000-45275000,
chr21:44075000-44100000~~chr21:45275000-45300000,
chr21:44925000-44950000~~chr21:45250000-45275000,
chr21:44925000-44950000~~chr21:45275000-45300000,
chr21:44950000-44975000~~chr21:45250000-45275000,
chr21:44950000-44975000~~chr21:45275000-45300000,
chr21:45125000-45150000~~chr21:45250000-45275000,
chr21:45125000-45150000~~chr21:45275000-45300000,
chr21:45139693-45141316~~chr21:45269360-45271607,
chr21:45139732-45141221~~chr21:45269444-45271544,
chr21:45139756-45141227~~chr21:45286276-45287465,
chr21:45150000-45175000~~chr21:45250000-45275000,
chr21:45150000-45175000~~chr21:45275000-45300000,
chr21:45151104-45153330~~chr21:45269360-45271607,
chr21:45269718-45271115~~chr21:46142948-46144578,
chr21:45275000-45300000~~chr21:45425000-45450000,
chr21:45275000-45300000~~chr21:45450000-45475000,
chr21:45275000-45300000~~chr21:45550000-45575000,
chr21:45275000-45300000~~chr21:45800000-45825000,
chr21:45275000-45300000~~chr21:45825000-45850000,
chr21:45291323-45293772~~chr21:45438105-45440722,
chr21:45291323-45293772~~chr21:45817787-45821574,
chr21:45291474-45293716~~chr21:45438468-45440893,
chr21:45291491-45294096~~chr21:45438220-45440789,
chr21:45291491-45294096~~chr21:45818200-45821818,
chr21:45291500-45293994~~chr21:45438098-45440775,
chr21:45291501-45293824~~chr21:45438412-45440648,
chr21:45291507-45293745~~chr21:45438455-45440695,
chr21:45291507-45293986~~chr21:45438105-45440682,
chr21:45291547-45293953~~chr21:45438417-45440836,
chr21:45291547-45293953~~chr21:45818438-45821813,
chr21:45291549-45293876~~chr21:45438384-45440554,
chr21:45291558-45293653~~chr21:45438389-45440412,
chr21:45291564-45293921~~chr21:45438366-45440780,
chr21:45291564-45293921~~chr21:45817873-45821737,
chr21:45291571-45293755~~chr21:45438142-45440624,
chr21:45291571-45293755~~chr21:45818578-45821611,
chr21:45291571-45294131~~chr21:45438069-45440905,
chr21:45291571-45294131~~chr21:45819046-45821833,
chr21:45291583-45293732~~chr21:45438575-45440579,
chr21:45291583-45293732~~chr21:45819758-45821568,
chr21:45291592-45293929~~chr21:45438202-45440761,
chr21:45291592-45293929~~chr21:45819288-45821635,
chr21:45291594-45293799~~chr21:45438457-45440874,
chr21:45291597-45293802~~chr21:45438059-45440543,
chr21:45291598-45293774~~chr21:45438356-45440737,
chr21:45291598-45293774~~chr21:45818539-45821603,
chr21:45291600-45293767~~chr21:45438318-45440592,
chr21:45291603-45293884~~chr21:45438441-45440492,
chr21:45291605-45293720~~chr21:45438411-45440683,
chr21:45291607-45293925~~chr21:45438383-45440733,
chr21:45291619-45293884~~chr21:45438345-45440658,
chr21:45291623-45294042~~chr21:45438381-45440438,
chr21:45291628-45293673~~chr21:45438557-45440573,
chr21:45291650-45293537~~chr21:45307909-45309938,
chr21:45291650-45293537~~chr21:45438627-45440426,
chr21:45291652-45295569~~chr21:45307925-45310422,
chr21:45291652-45295569~~chr21:45438099-45440648,
chr21:45291660-45293601~~chr21:45438433-45440517,
chr21:45291678-45293713~~chr21:45308127-45310479,
chr21:45291678-45293713~~chr21:45438129-45440499,
chr21:45291692-45293742~~chr21:45438474-45440647,
chr21:45291699-45293755~~chr21:45438127-45440654,
chr21:45291699-45293755~~chr21:45819453-45821601,
chr21:45291702-45294027~~chr21:45438277-45440446,
chr21:45291702-45294027~~chr21:45819878-45821577,
chr21:45291718-45293633~~chr21:45438479-45440419,
chr21:45291806-45293737~~chr21:45438460-45440575,
chr21:45291806-45293737~~chr21:45819512-45821569,
chr21:45291818-45293858~~chr21:45438511-45440385,
chr21:45291818-45293858~~chr21:45819958-45821534,
chr21:45291823-45294686~~chr21:45438049-45440695,
chr21:45291830-45293531~~chr21:45438737-45440429,
chr21:45291838-45294439~~chr21:45438069-45440692,
chr21:45291845-45293744~~chr21:45438439-45440623,
chr21:45291876-45293661~~chr21:45438456-45440373,
chr21:45291883-45293599~~chr21:45438463-45440437,
chr21:45291893-45293747~~chr21:45438572-45440279,
chr21:45291897-45293741~~chr21:45438535-45440612,
chr21:45291900-45293744~~chr21:45438474-45440451,
chr21:45291920-45293888~~chr21:45438261-45440427,
chr21:45291920-45293888~~chr21:45819854-45821495,
chr21:45291923-45293716~~chr21:45438598-45440391,
chr21:45291923-45293716~~chr21:45879919-45881338,
chr21:45291941-45293676~~chr21:45438578-45440270,
chr21:45291941-45293676~~chr21:45820016-45821418,
chr21:45291944-45293872~~chr21:45438469-45440424,
chr21:45291945-45293660~~chr21:45438594-45440402,
chr21:45291990-45293339~~chr21:45438877-45440262,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE43070, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, GSE115252, GSE103148, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIA6NSSBJ, ENCSR113OIR, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFICEGAHRC, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, GSE116872, 4DNFIAWVDQ8C, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, ENCSR146FPM, GSE155380, ENCSR587DSF, ENCSR452NHL, GSE80820, 4DNFIYWONU7A, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFI5CGQ46V, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, ENCSR444BAR, ENCSR123UVP, GSE165038, 4DNFIALNLR78, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, ENCSR933UZH, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFI6EIFUZI, 4DNFIBCIA62Q, GSE111537, ENCSR381DCY, ENCSR981FNA, ENCSR752QCX, ENCSR128RPG, 4DNFI1UEG1HD, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFIP71EWXC, 4DNFIHN2QSMX, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: SLK,OCI-AML-3
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE111537,GSE138937
- Cohesin-DEGs, subunit: Rad21,SA2