Browse_each

Basic information

CohesinDB ID: CDBG00016355

Gene Symbol: KRTAP19-5

Ensembl ID: ENSG00000186977

Gene locus: chr21:30501656-30502141 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0192 FDR = 0.0132
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: K1,H1-Mesendoderm,Olfactory,MCF-7,GM12891,GM12878,K-562,HeLa-S3,H1-Trophectoderm,KU-19-19,H9-hESC,iPSC,Liver,H1-hESC,HCC1599,GM19238,CyT49-endoderm,Jurkat,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, ENCSR361AYD, 4DNFIBM714BP, 4DNFIJWBWE41, ENCSR981FNA, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, GSE52457, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFI6XD6JAQ, 4DNFIX7H3CE2, 4DNFIYDBBSE3, GSE116872, ENCSR404HWQ, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, ENCSR527RXH, GSE105028, 4DNFIDBIEXI7, GSE58752, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000186977