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Basic information

CohesinDB ID: CDBG00016356

Gene Symbol: KRTAP23-1

Ensembl ID: ENSG00000186980

Gene locus: chr21:30348398-30348606 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0185 FDR = 0.0166
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,Liver,SARS-Cov2-olfactory,GM12878,H9-endodermal,Hep-G2,Olfactory,H1-hESC,A-549,HFF-hTERT,Motor-Neuron,CyT49-pancreatic,HFFc6,HeLa-S3,K1,H9-hESC,H1-Mesenchymal,HUES64

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, ENCSR662QKG, ENCSR194SRI, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, 4DNFI5SUHCGZ, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIEYQ5ZIR, ENCSR478BMT, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, GSE52457, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFI1UEG1HD, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFI8JFOAJT, ENCSR393LOP, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFINEQY95T, ENCSR094EIC, 4DNFIDZT7PR8, GSE105028, GSE58752, 4DNFII84FBKM

Cohesin-loop subunit: CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000186980