Deatailed information for gene ENSG00000187172
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00016400
- Gene Symbol: BAGE2
- Ensembl ID: ENSG00000187172
-
Gene locus: chr21:10454133-10516431
Strand: +
- Gene type: transcribed_unprocessed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0664
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.979
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,H1-Mesendoderm,Olfactory,SARS-Cov2-olfactory,GM12878,K-562,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,H1-hESC,CyT49-hESC,HL-60,CyT49-endoderm,CyT49-Gut,HFF-hTERT,HAP1
- Related loop:
chr21:10250000-10275000~~chr21:10425000-10450000,
chr21:10250000-10275000~~chr21:10450000-10475000,
chr21:10325000-10350000~~chr21:10425000-10450000,
chr21:10325000-10350000~~chr21:10450000-10475000,
chr21:10350000-10375000~~chr21:10450000-10475000,
chr21:10425000-10450000~~chr21:31775000-31800000,
chr21:10450000-10475000~~chr21:10550000-10575000,
chr21:10450000-10475000~~chr21:10750000-10775000,
chr21:10450000-10475000~~chr21:10800000-10825000,
chr21:5225000-5250000~~chr21:10425000-10450000,
chr21:5225000-5250000~~chr21:10450000-10475000,
chr21:5350000-5375000~~chr21:10450000-10475000,
chr21:7925000-7950000~~chr21:10425000-10450000,
chr21:7950000-7975000~~chr21:10425000-10450000,
chr21:7950000-7975000~~chr21:10450000-10475000,
chr21:8025000-8050000~~chr21:10425000-10450000,
chr21:8675000-8700000~~chr21:10425000-10450000,
chr21:8675000-8700000~~chr21:10450000-10475000,
chr21:8750000-8775000~~chr21:10425000-10450000,
chr21:8775000-8800000~~chr21:10425000-10450000,
chr21:8975000-9000000~~chr21:10450000-10475000,
chr21:9000000-9025000~~chr21:10425000-10450000,
chr21:9000000-9025000~~chr21:10450000-10475000,
chr21:9150000-9175000~~chr21:10450000-10475000,
chr21:9225000-9250000~~chr21:10450000-10475000,
chr21:9725000-9750000~~chr21:10450000-10475000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, 4DNFI7H4II2V, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, 4DNFIYD8LO9Z, GSE131580, 4DNFIBXWIH8J, 4DNFIJWBWE41, ENCSR123UVP, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, GSE52457, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIXWCLD4M, 4DNFIV56OFE3, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIEJEFCAM, 4DNFIZF1KI43, 4DNFIQRTP7NM, 4DNFI9815EEJ, GSE48592, 4DNFI7XAZNNQ, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIS5F6EBL, 4DNFIH7TH4MF, GSE105028, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .