Deatailed information for gene ENSG00000188681
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00016753
- Gene Symbol: TEKT4P2
- Ensembl ID: ENSG00000188681
-
Gene locus: chr21:9068360-9129752
Strand: -
- Gene type: transcribed_unprocessed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): True
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
chr21-8774921-8776421,
chr21-8777197-8777587,
chr21-8778301-8779274,
chr21-8779830-8780154,
chr21-8782866-8783149,
chr21-8784821-8785458,
chr21-8786700-8788788,
chr21-8789052-8789340,
chr21-8789926-8790191,
chr21-8794412-8794748,
chr21-8795298-8795732,
chr21-8796154-8796759,
chr21-8797284-8797542,
chr21-8798266-8799646,
chr21-9063498-9076214,
chr21-9077502-9078415,
chr21-9082072-9083976,
chr21-9084349-9085427,
chr21-9086314-9088620,
chr21-9088822-9089068,
chr21-9090697-9093445,
chr21-9095452-9097083,
chr21-9098917-9100318,
chr21-9103580-9104011,
chr21-9104705-9105121,
chr21-9106135-9107547,
chr21-9107800-9108171,
chr21-9109389-9110266,
chr21-9110551-9110797,
chr21-9111893-9112450,
chr21-9113177-9113950,
chr21-9114770-9115257,
chr21-9115714-9116870,
chr21-9117438-9117905,
chr21-9118383-9120230,
chr21-9121000-9121430,
chr21-9121876-9123182,
chr21-9124295-9125188,
chr21-9125695-9126374,
chr21-9126755-9127517,
chr21-9128137-9128432,
chr21-9128859-9130355,
chr21-9130724-9131454,
chr21-9132259-9133674,
chr21-9134633-9134993,
chr21-9300291-9300747,
chr21-9302068-9302708,
chr21-9304345-9305064,
chr21-9305718-9306456,
chr21-9307532-9308497,
chr21-9308865-9310050,
chr21-9310277-9310643,
chr21-9311117-9311740,
chr21-9312967-9313629,
chr21-9317927-9318545,
chr21-9319178-9320178,
chr21-9321496-9321793,
chr21-9322143-9334776,
chr21-9335678-9336410,
chr21-9336757-9337985,
chr21-9338222-9340431,
chr21-9340714-9347060,
chr21-9347261-9350052,
chr21-9350975-9352080,
chr21-9352897-9353360,
chr21-9353580-9354934,
chr21-9355168-9357652,
chr21-9357988-9358799,
chr21-9360219-9362945,
chr21-9363198-9369305,
chr21-9369552-9370719,
chr21-9371311-9371648,
chr21-9372442-9373558,
chr21-9374137-9375993,
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Co-expression with cohesin genes Rho = 0.2657
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.228
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): 0.926
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: HFFc6,PAEC,RT-112
- Related loop:
chr21:8775000-8800000~~chr21:9100000-9125000,
chr21:9075000-9100000~~chr21:13975000-14000000,
chr21:9100000-9125000~~chr21:9325000-9350000,
chr21:9100000-9125000~~chr21:9350000-9375000,
chr21:9115312-9116573~~chr21:9344147-9345296,
chr21:9125000-9150000~~chr21:9300000-9325000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR668RDP, GSE155380, Direct, 4DNFI5SUHCGZ
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence: Keratinocytes,Kasumi-1
- Cohesin-DEGs, number of studies: 2
- Cohesin-DEGs, study: GSE83870,GSE47641
- Cohesin-DEGs, subunit: Rad21,SMC1