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Basic information

CohesinDB ID: CDBG00016863

Gene Symbol: RIMKLBP1

Ensembl ID: ENSG00000189089

Gene locus: chr21:36050213-36051377 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3848 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.421
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,MCF-7,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H9-hESC,HCT-116,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,HUVEC,HL-60,RT-112,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE95015, GSE94872, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE118716, ENCSR499RVD, ENCSR794RDS, GSE116869, 4DNFI5SUHCGZ, GSE120294, 4DNFIZ4F74QR, ENCSR410MDC, ENCSR350NJV, 4DNFIMEG1QIC, 4DNFIEYQ5ZIR, 4DNFIYD8LO9Z, ENCSR668RDP, GSE131580, GSE155380, 4DNFICSTCJQZ, ENCSR123UVP, GSE97394, 4DNFICEGAHRC, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR550JLK, 4DNFI3A3VYWU, Direct, 4DNFISPUVQHA, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, 4DNFIK61ILGM, GSE116872, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIDZT7PR8, ENCSR094EIC, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000189089