Deatailed information for gene ENSG00000197683
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00017481
- Gene Symbol: KRTAP26-1
- Ensembl ID: ENSG00000197683
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Gene locus: chr21:30319123-30320315
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0693
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,SARS-Cov2-olfactory,GM12878,Hep-G2,H1-hESC,A-549,HFF-hTERT,Motor-Neuron,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,Olfactory,HUES64
- Related loop:
chr21:27075000-27100000~~chr21:30300000-30325000,
chr21:30325000-30350000~~chr21:30425000-30450000,
chr21:30325000-30350000~~chr21:30450000-30475000,
chr21:30325000-30350000~~chr21:30600000-30625000,
chr21:30325000-30350000~~chr21:30700000-30725000,
chr21:30325000-30350000~~chr21:30725000-30750000,
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30325000-30350000~~chr21:30950000-30975000,
chr21:30325000-30350000~~chr21:31075000-31100000,
chr21:30325000-30350000~~chr21:31600000-31625000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIQWD8ZYD, ENCSR662QKG, ENCSR194SRI, 4DNFIMROE6N4, GSE118716, 4DNFI5SUHCGZ, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE97394, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, Direct, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFI1UEG1HD, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFI8JFOAJT, ENCSR393LOP, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFINEQY95T, ENCSR094EIC, 4DNFIDZT7PR8, GSE105028, 4DNFII84FBKM
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .