Deatailed information for gene ENSG00000197934
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00017561
- Gene Symbol: CYYR1-AS1
- Ensembl ID: ENSG00000197934
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Gene locus: chr21:26405942-26569252
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3384
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.394
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,REC-1,RT-112,K-562,HT-1197,Kelly,H1-hESC,HFF-hTERT,HAP1,HFFc6,Keratinocytes192627,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,HUES64
- Related loop:
chr21:25525000-25550000~~chr21:26525000-26550000,
chr21:25600000-25625000~~chr21:26475000-26500000,
chr21:25600000-25625000~~chr21:26525000-26550000,
chr21:25650000-25675000~~chr21:26525000-26550000,
chr21:25750000-25775000~~chr21:26400000-26425000,
chr21:25750000-25775000~~chr21:26450000-26475000,
chr21:25750000-25775000~~chr21:26525000-26550000,
chr21:25775000-25800000~~chr21:26525000-26550000,
chr21:25825000-25850000~~chr21:26450000-26475000,
chr21:25850000-25875000~~chr21:26450000-26475000,
chr21:25875000-25900000~~chr21:26400000-26425000,
chr21:25875000-25900000~~chr21:26525000-26550000,
chr21:25950000-25975000~~chr21:26525000-26550000,
chr21:26050000-26075000~~chr21:26525000-26550000,
chr21:26150000-26175000~~chr21:26425000-26450000,
chr21:26150000-26175000~~chr21:26525000-26550000,
chr21:26150000-26175000~~chr21:26550000-26575000,
chr21:26225000-26250000~~chr21:26450000-26475000,
chr21:26250000-26275000~~chr21:26525000-26550000,
chr21:26280148-26281900~~chr21:26553610-26556682,
chr21:26375000-26400000~~chr21:26525000-26550000,
chr21:26388393-26391116~~chr21:26404699-26406873,
chr21:26400000-26425000~~chr21:26700000-26725000,
chr21:26425000-26450000~~chr21:26525000-26550000,
chr21:26425000-26450000~~chr21:26550000-26575000,
chr21:26450000-26475000~~chr21:26625000-26650000,
chr21:26475000-26500000~~chr21:26700000-26725000,
chr21:26500000-26525000~~chr21:26700000-26725000,
chr21:26525000-26550000~~chr21:26625000-26650000,
chr21:26525000-26550000~~chr21:26650000-26675000,
chr21:26525000-26550000~~chr21:26675000-26700000,
chr21:26525000-26550000~~chr21:28425000-28450000,
chr21:26550000-26575000~~chr21:26700000-26725000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, 4DNFIWZEN3FF, GSE43070, GSE116875, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, GSE103148, 4DNFIW8TIFI5, 4DNFIBM714BP, GSE155380, 4DNFIJWBWE41, 4DNFIV239W4L, GSE97394, 4DNFIL9M97T2, 4DNFIE8T8JZ8, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI6JJQKFJ, GSE44267, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .