Deatailed information for gene ENSG00000198054
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00017606
- Gene Symbol: DSCR8
- Ensembl ID: ENSG00000198054
-
Gene locus: chr21:38121472-38156511
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0485
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,Aorta,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,Primed-hESC,NCI-H1437,iPSC,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,H1-NPC,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,KBM-7,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR,Neutrophil
- Related loop:
chr21:36125000-36150000~~chr21:38150000-38175000,
chr21:36975000-37000000~~chr21:38125000-38150000,
chr21:37150000-37175000~~chr21:38150000-38175000,
chr21:37266529-37268622~~chr21:38120549-38122138,
chr21:37450000-37475000~~chr21:38150000-38175000,
chr21:37525000-37550000~~chr21:38150000-38175000,
chr21:37674157-37676230~~chr21:38125761-38128067,
chr21:37674162-37676306~~chr21:38125779-38127911,
chr21:37674191-37676998~~chr21:38125778-38127949,
chr21:37674274-37676281~~chr21:38125767-38127866,
chr21:37674327-37676274~~chr21:38125740-38127873,
chr21:37674344-37676262~~chr21:38125763-38127934,
chr21:37674476-37676308~~chr21:38125790-38127976,
chr21:37699607-37702263~~chr21:38125790-38127981,
chr21:37699607-37702263~~chr21:38158064-38160479,
chr21:37699731-37701840~~chr21:38125767-38127866,
chr21:37699733-37701770~~chr21:38125761-38128067,
chr21:37699764-37701688~~chr21:38125740-38127873,
chr21:37699767-37701789~~chr21:38125763-38127934,
chr21:37699782-37701775~~chr21:38125778-38127949,
chr21:37699800-37701800~~chr21:38125754-38127987,
chr21:37699813-37701825~~chr21:38125771-38127931,
chr21:37699831-37701768~~chr21:38125934-38127923,
chr21:37699842-37701862~~chr21:38125749-38127915,
chr21:37699849-37701736~~chr21:38125958-38127687,
chr21:37699862-37702222~~chr21:38125791-38127926,
chr21:37699932-37701752~~chr21:38126125-38127630,
chr21:37699988-37701699~~chr21:38126068-38127606,
chr21:37699994-37701579~~chr21:38126227-38127525,
chr21:37700000-37725000~~chr21:38100000-38125000,
chr21:37700000-37725000~~chr21:38125000-38150000,
chr21:37700000-37725000~~chr21:38150000-38175000,
chr21:37700007-37701742~~chr21:38126169-38127633,
chr21:37700028-37701831~~chr21:38125971-38127690,
chr21:37700066-37701913~~chr21:38126191-38127689,
chr21:37700073-37701763~~chr21:38126208-38127589,
chr21:37700099-37701668~~chr21:38126009-38127720,
chr21:37700112-37701685~~chr21:38125778-38127688,
chr21:37700162-37701530~~chr21:38126218-38127536,
chr21:37710058-37714050~~chr21:38139516-38141430,
chr21:37710487-37712977~~chr21:38125804-38127970,
chr21:37710499-37712987~~chr21:38125763-38127934,
chr21:37710638-37713716~~chr21:38125790-38127981,
chr21:37710736-37713758~~chr21:38125761-38128067,
chr21:37711372-37713046~~chr21:38125725-38127860,
chr21:37711392-37713025~~chr21:38125767-38127866,
chr21:37711392-37713166~~chr21:38125754-38127987,
chr21:37711394-37712982~~chr21:38125749-38127915,
chr21:37711395-37713012~~chr21:38125801-38127928,
chr21:37711396-37712996~~chr21:38125971-38127690,
chr21:37711397-37713457~~chr21:38125740-38127873,
chr21:37711406-37712950~~chr21:38125771-38127931,
chr21:37711408-37712950~~chr21:38125778-38127949,
chr21:37711418-37712993~~chr21:38125791-38127926,
chr21:37711434-37712961~~chr21:38126151-38127594,
chr21:37711434-37712993~~chr21:38125779-38127911,
chr21:37711438-37713000~~chr21:38125779-38127948,
chr21:37711441-37713006~~chr21:38125941-38127948,
chr21:37711442-37712977~~chr21:38126150-38127604,
chr21:37711445-37712965~~chr21:38125778-38127688,
chr21:37711446-37713025~~chr21:38125798-38127942,
chr21:37711455-37712980~~chr21:38125790-38127976,
chr21:37711462-37712982~~chr21:38126125-38127630,
chr21:37711467-37712985~~chr21:38125934-38127923,
chr21:37711574-37712971~~chr21:38126041-38127628,
chr21:37711651-37712969~~chr21:38126216-38127622,
chr21:37717141-37718351~~chr21:38125790-38127976,
chr21:37725000-37750000~~chr21:38125000-38150000,
chr21:37750000-37775000~~chr21:38100000-38125000,
chr21:37750000-37775000~~chr21:38125000-38150000,
chr21:37750000-37775000~~chr21:38150000-38175000,
chr21:37757478-37760684~~chr21:38125761-38128067,
chr21:37758041-37760564~~chr21:38125790-38127981,
chr21:37758054-37760218~~chr21:38125818-38127945,
chr21:37758083-37760394~~chr21:38120483-38122671,
chr21:37758083-37760394~~chr21:38125791-38127988,
chr21:37758088-37760278~~chr21:38125754-38127987,
chr21:37758111-37760132~~chr21:38125778-38127688,
chr21:37758115-37760170~~chr21:38120552-38122290,
chr21:37758115-37760170~~chr21:38125779-38127948,
chr21:37758129-37760281~~chr21:38125791-38127926,
chr21:37758130-37760186~~chr21:38126066-38127958,
chr21:37758140-37760150~~chr21:38125798-38127942,
chr21:37758144-37760203~~chr21:38125941-38127948,
chr21:37758163-37760055~~chr21:38125763-38127934,
chr21:37758198-37760138~~chr21:38125801-38127928,
chr21:37758212-37760210~~chr21:38125779-38127911,
chr21:37758230-37760229~~chr21:38125749-38127915,
chr21:37758324-37760023~~chr21:38125804-38127970,
chr21:37758368-37760158~~chr21:38125770-38127709,
chr21:37758370-37760095~~chr21:38125971-38127690,
chr21:37758391-37760172~~chr21:38126009-38127637,
chr21:37758410-37759974~~chr21:38125958-38127687,
chr21:37758419-37759941~~chr21:38125927-38127658,
chr21:37758428-37759911~~chr21:38125778-38127949,
chr21:37758446-37759976~~chr21:38125725-38127860,
chr21:37758468-37759930~~chr21:38126131-38127619,
chr21:37758479-37759910~~chr21:38126125-38127630,
chr21:37758513-37759885~~chr21:38126191-38127689,
chr21:37758520-37759866~~chr21:38126208-38127589,
chr21:37758563-37759871~~chr21:38126251-38127506,
chr21:37800000-37825000~~chr21:38125000-38150000,
chr21:37900000-37925000~~chr21:38125000-38150000,
chr21:37900000-37925000~~chr21:38150000-38175000,
chr21:37915283-37917809~~chr21:38125779-38127911,
chr21:37915315-37917747~~chr21:38125798-38127942,
chr21:37915343-37917688~~chr21:38126066-38127958,
chr21:37915529-37918394~~chr21:38125749-38127915,
chr21:37915593-37917649~~chr21:38125927-38127658,
chr21:37915609-37917622~~chr21:38125799-38127662,
chr21:37917683-37919463~~chr21:38139516-38141430,
chr21:37950000-37975000~~chr21:38125000-38150000,
chr21:38000000-38025000~~chr21:38100000-38125000,
chr21:38025000-38050000~~chr21:38150000-38175000,
chr21:38038817-38040294~~chr21:38125790-38127976,
chr21:38038824-38040349~~chr21:38125769-38128010,
chr21:38050000-38075000~~chr21:38150000-38175000,
chr21:38125000-38150000~~chr21:38250000-38275000,
chr21:38125000-38150000~~chr21:38275000-38300000,
chr21:38150000-38175000~~chr21:38250000-38275000,
chr21:38150000-38175000~~chr21:38325000-38350000,
chr21:38150000-38175000~~chr21:38350000-38375000,
chr21:38150000-38175000~~chr21:38450000-38475000,
chr21:38150000-38175000~~chr21:38475000-38500000,
chr21:38150000-38175000~~chr21:38500000-38525000,
chr21:38150000-38175000~~chr21:38525000-38550000,
chr21:38150000-38175000~~chr21:38575000-38600000,
chr21:38150000-38175000~~chr21:38675000-38700000,
chr21:38150000-38175000~~chr21:38700000-38725000,
chr21:38150000-38175000~~chr21:38800000-38825000,
chr21:38150000-38175000~~chr21:39125000-39150000,
chr21:38150000-38175000~~chr21:39150000-39175000,
chr21:38158064-38160479~~chr21:38351388-38354007,
chr21:38158438-38160422~~chr21:38351780-38353719,
chr21:38158438-38160422~~chr21:38355261-38357283,
chr21:38158438-38160422~~chr21:38679162-38680418,
chr21:38158460-38160574~~chr21:38351759-38353738,
chr21:38158460-38160574~~chr21:38355341-38357288,
chr21:38158464-38160549~~chr21:38351519-38353809,
chr21:38158464-38160549~~chr21:38355287-38357113,
chr21:38158472-38160305~~chr21:38352098-38353429,
chr21:38158472-38160305~~chr21:38355322-38357346,
chr21:38158472-38160305~~chr21:39136790-39139170,
chr21:38158477-38160564~~chr21:38355436-38357215,
chr21:38158479-38160408~~chr21:38351572-38353692,
chr21:38158479-38160408~~chr21:38355442-38357264,
chr21:38158491-38160484~~chr21:38351556-38353703,
chr21:38158491-38160484~~chr21:38355373-38357156,
chr21:38158494-38160686~~chr21:38351797-38353501,
chr21:38158497-38160660~~chr21:38355246-38357158,
chr21:38158505-38160687~~chr21:38351815-38353489,
chr21:38158505-38160687~~chr21:38355129-38357200,
chr21:38158512-38160256~~chr21:38355303-38357092,
chr21:38158515-38160688~~chr21:38351774-38353531,
chr21:38158515-38160688~~chr21:38355109-38357144,
chr21:38158517-38160440~~chr21:38352008-38353488,
chr21:38158517-38160440~~chr21:38355104-38357300,
chr21:38158532-38160501~~chr21:38351536-38353710,
chr21:38158532-38160501~~chr21:38355168-38357210,
chr21:38158533-38160240~~chr21:38355310-38357176,
chr21:38158550-38160509~~chr21:38351755-38353771,
chr21:38158555-38160447~~chr21:38351543-38353716,
chr21:38158555-38160447~~chr21:38355432-38357106,
chr21:38158562-38160466~~chr21:38351763-38353495,
chr21:38158562-38160466~~chr21:38355294-38357093,
chr21:38158592-38160196~~chr21:38351760-38353699,
chr21:38158643-38160168~~chr21:38355395-38357114,
chr21:38158655-38160611~~chr21:38355161-38357075,
chr21:38158678-38160534~~chr21:38351658-38353626,
chr21:38158678-38160534~~chr21:38355381-38356880,
chr21:38158688-38160510~~chr21:38351614-38353621,
chr21:38158688-38160510~~chr21:38355333-38356894,
chr21:38158704-38160403~~chr21:38351897-38353541,
chr21:38158704-38160403~~chr21:38355373-38356883,
chr21:38158707-38160293~~chr21:38352000-38353494,
chr21:38158707-38160293~~chr21:38355328-38356918,
chr21:38158708-38160246~~chr21:38355356-38356896,
chr21:38158716-38160282~~chr21:38355434-38357110,
chr21:38158728-38160387~~chr21:38355416-38357087,
chr21:38158739-38160366~~chr21:38352028-38353492,
chr21:38158743-38160234~~chr21:38355460-38356861,
chr21:38158760-38160183~~chr21:38352107-38353483,
chr21:38158776-38160250~~chr21:38355359-38356908,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, 4DNFIKYXMF1E, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE112000, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, 4DNFIOX3BGNE, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIZ95S6TR, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR933UZH, GSE58752, GSE116869, 4DNFI8649RQJ, 4DNFIRZA6EV6, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, GSE126756, 4DNFIILDWK8M, 4DNFIP25GZGA, 4DNFI6EIFUZI, ENCSR866FWQ, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .