Deatailed information for gene ENSG00000199598
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00018198
- Gene Symbol: RNU6-859P
- Ensembl ID: ENSG00000199598
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Gene locus: chr21:43919794-43919901
Strand: -
- Gene type: snRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0272
FDR = 0.0004
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,NCI-H1437,GM12891,GM12878,K-562,TAMR-MCF7,H1-hESC,MCF7-FASR,HeLa-S3
- Related loop:
chr21:43000000-43025000~~chr21:43900000-43925000,
chr21:43350000-43375000~~chr21:43900000-43925000,
chr21:43800000-43825000~~chr21:43900000-43925000,
chr21:43810123-43811942~~chr21:43917618-43918968,
chr21:43864707-43867527~~chr21:43916051-43918979,
chr21:43900000-43925000~~chr21:44250000-44275000,
chr21:43900000-43925000~~chr21:44425000-44450000,
chr21:43900000-43925000~~chr21:44475000-44500000,
chr21:43900000-43925000~~chr21:45400000-45425000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIE8T8JZ8, 4DNFIPAF4PYT, 4DNFIBRSIPE4, 4DNFIM2BMJ33, Direct, ENCSR299VMZ, GSE118716, ENCSR833CMG, 4DNFI1UEG1HD, GSE80820, ENCSR410MDC
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .