Deatailed information for gene ENSG00000199806
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00018286
- Gene Symbol: RNA5SP491
- Ensembl ID: ENSG00000199806
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Gene locus: chr21:36851910-36852028
Strand: +
- Gene type: rRNA_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0303
FDR = 0.0001
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: DU145,GM12892,hTERT-HME1,Hepatocyte-H9,MCF-7,HEK293T,GM12878,K-562,SU-DHL-2,KU-19-19,H9-hESC,ARPE-19,HT-1197,H1-hESC,GM19238,MSLCL,BMEC,HUES64,SU-DHL-4,NPC-H9
- Related loop:
chr21:36400000-36425000~~chr21:36850000-36875000,
chr21:36419354-36421097~~chr21:36853698-36855512,
chr21:36500000-36525000~~chr21:36825000-36850000,
chr21:36503297-36505649~~chr21:36853680-36855572,
chr21:36503500-36505460~~chr21:36853738-36855617,
chr21:36575000-36600000~~chr21:36850000-36875000,
chr21:36600000-36625000~~chr21:36850000-36875000,
chr21:36625000-36650000~~chr21:36850000-36875000,
chr21:36629999-36631989~~chr21:36853631-36855655,
chr21:36629999-36631990~~chr21:36853672-36855599,
chr21:36630020-36631673~~chr21:36853741-36855359,
chr21:36630022-36631930~~chr21:36853698-36855512,
chr21:36630041-36631980~~chr21:36853648-36855688,
chr21:36630061-36631975~~chr21:36853777-36855522,
chr21:36630079-36631909~~chr21:36853738-36855617,
chr21:36630079-36632006~~chr21:36853685-36855567,
chr21:36630135-36631927~~chr21:36853724-36855502,
chr21:36630184-36631672~~chr21:36853762-36855538,
chr21:36661133-36662988~~chr21:36853672-36855599,
chr21:36661203-36662789~~chr21:36853762-36855538,
chr21:36661239-36662859~~chr21:36853733-36855333,
chr21:36700000-36725000~~chr21:36850000-36875000,
chr21:36727406-36729008~~chr21:36853567-36855599,
chr21:36746609-36749083~~chr21:36853704-36855509,
chr21:36746841-36748820~~chr21:36853768-36855574,
chr21:36746942-36748770~~chr21:36853698-36855512,
chr21:36746964-36748885~~chr21:36853704-36855614,
chr21:36746970-36748653~~chr21:36853694-36855322,
chr21:36750000-36775000~~chr21:36850000-36875000,
chr21:36825000-36850000~~chr21:36925000-36950000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIDJ2JZ7Q, GSE120294, ENCSR672RHL, ENCSR381DCY, GSE97394, ENCSR587DSF, ENCSR452NHL, GSE80820, ENCSR128RPG, ENCSR658RQQ, Direct, ENCSR386KHY, GSE44267, ENCSR991JXX, ENCSR255XYX, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, ENCSR527RXH, GSE105028, ENCSR507AHE, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .