Deatailed information for gene ENSG00000200213

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  • Basic information
  • CohesinDB ID: CDBG00018458
  • Gene Symbol: RNU6-992P
  • Ensembl ID: ENSG00000200213
  • Gene locus: chr21:36066544-36066652 Strand: +
  • Gene type: snRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0772 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,HCT-116,GM12878,Hep-G2,HT-1197,H1-hESC,HFF-hTERT,HAP1
  • Related loop: chr21:34350000-34375000~~chr21:36050000-36075000, chr21:36050000-36075000~~chr21:36200000-36225000, chr21:36059236-36061877~~chr21:36111989-36114651, chr21:36059347-36061711~~chr21:36102970-36104752, chr21:36069440-36070708~~chr21:36112102-36113990,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFI9YAVTI1, GSE95015, ENCSR255XYX, Direct, 4DNFIYD8LO9Z, 4DNFIP71EWXC, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI6JJQKFJ, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR123UVP, 4DNFIIMZB6Y9, ENCSR410MDC
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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