Deatailed information for gene ENSG00000200792
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00018723
- Gene Symbol: SNORA80A
- Ensembl ID: ENSG00000200792
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Gene locus: chr21:32377186-32377322
Strand: -
- Gene type: snoRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0558
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,iPSC,GM12878,Hep-G2,IMR-90,K-562,TAMR-MCF7,Kelly,H1-hESC,A-549,CC-2551,HAP1,HFF-hTERT,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC,HUVEC
- Related loop:
chr21:27500000-27525000~~chr21:32350000-32375000,
chr21:29050000-29075000~~chr21:32350000-32375000,
chr21:31850000-31875000~~chr21:32375000-32400000,
chr21:32350000-32375000~~chr21:32600000-32625000,
chr21:32350000-32375000~~chr21:32725000-32750000,
chr21:32350000-32375000~~chr21:32750000-32775000,
chr21:32350000-32375000~~chr21:33525000-33550000,
chr21:32350000-32375000~~chr21:34325000-34350000,
chr21:32375000-32400000~~chr21:32575000-32600000,
chr21:32375000-32400000~~chr21:32600000-32625000,
chr21:32375000-32400000~~chr21:32700000-32725000,
chr21:32375000-32400000~~chr21:32725000-32750000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32800000-32825000,
chr21:32375000-32400000~~chr21:33275000-33300000,
chr21:32375000-32400000~~chr21:33500000-33525000,
chr21:32375000-32400000~~chr21:33625000-33650000,
chr21:32375000-32400000~~chr21:34500000-34525000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, ENCSR662QKG, GSE95015, 4DNFIATA1HD5, 4DNFIWZEN3FF, GSE94872, 4DNFIMROE6N4, GSE118716, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, ENCSR852KQC, GSE126792, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFII6AN691, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9, GSE80820, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIBT4EAKN, GSE52457, 4DNFI3A3VYWU, Direct, 4DNFISPUVQHA, 4DNFIBY3UHJB, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIPAF4PYT, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other,SMC1
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .