Deatailed information for gene ENSG00000201812
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00019197
- Gene Symbol: RNA5SP488
- Ensembl ID: ENSG00000201812
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Gene locus: chr21:14070870-14070986
Strand: +
- Gene type: rRNA_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0922
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,MCF7-FASR,GM12878,TAMR-MCF7
- Related loop:
chr21:13500000-13525000~~chr21:14050000-14075000,
chr21:13875000-13900000~~chr21:14050000-14075000,
chr21:13975000-14000000~~chr21:14075000-14100000,
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:14075000-14100000~~chr21:15025000-15050000,
chr21:14075000-14100000~~chr21:15725000-15750000,
chr21:14075000-14100000~~chr21:17600000-17625000,
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:6875000-6900000~~chr21:14050000-14075000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFI1UEG1HD, Direct, ENCSR410MDC, GSE118716
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .