Deatailed information for gene ENSG00000205439

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  • Basic information
  • CohesinDB ID: CDBG00020168
  • Gene Symbol: KRTAP12-3
  • Ensembl ID: ENSG00000205439
  • Gene locus: chr21:44657931-44658341 Strand: +
  • Gene type: protein_coding
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.0000 FDR = 1.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,Hep-G2,K-562,TAMR-MCF7,H1-hESC,HFF-hTERT,HFFc6,HeLa-S3
  • Related loop: chr21:22525000-22550000~~chr21:44650000-44675000, chr21:27500000-27525000~~chr21:44650000-44675000, chr21:44475000-44500000~~chr21:44650000-44675000, chr21:44650000-44675000~~chr21:44875000-44900000, chr21:44650000-44675000~~chr21:45200000-45225000, chr21:44650000-44675000~~chr21:45325000-45350000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: GSE44267, 4DNFI8649RQJ, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIBM714BP, Direct, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, 4DNFIFLJLIS5, 4DNFIB7QTIMH, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIW8TIFI5, 4DNFICEGAHRC
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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