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Basic information

CohesinDB ID: CDBG00020209

Gene Symbol: AP001042.1

Ensembl ID: ENSG00000205622

Gene locus: chr21:38812877-38905423 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0253 FDR = 0.0010
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.573
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Keratinocytes192627,Aorta,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,iPSC,Liver,H1-hESC,HT-1376,Motor-Neuron,Bladder,BMEC,SU-DHL-4,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, GSE108787, GSE120294, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, GSE155380, 4DNFIV239W4L, ENCSR587DSF, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFIL9M97T2, 4DNFIOUSETUP, ENCSR507AHE, 4DNFI3A3VYWU, GSE52457, 4DNFIJ7OAIFQ, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIXWCLD4M, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFIBY3UHJB, 4DNFI6JJQKFJ, 4DNFIX7H3CE2, GSE101921, 4DNFIK61ILGM, GSE108869, ENCSR244BBG, 4DNFIZF1KI43, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR305RTT, 4DNFI5LCW273, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE105028, 4DNFIDBIEXI7, 4DNFIS5F6EBL, GSE58752, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000205622