Deatailed information for gene ENSG00000205929

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  • Basic information
  • CohesinDB ID: CDBG00020297
  • Gene Symbol: C21orf62
  • Ensembl ID: ENSG00000205929
  • Gene locus: chr21:32790672-32813703 Strand: -
  • Gene type: protein_coding
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1978 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.748
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,GM12878,RT-112,Hep-G2,MCF-10A,TAMR-MCF7,H1-hESC,Motor-Neuron,HAP1,MCF7-FASR,HUVEC
  • Related loop: chr21:31100000-31125000~~chr21:32800000-32825000, chr21:31200000-31225000~~chr21:32800000-32825000, chr21:32375000-32400000~~chr21:32800000-32825000, chr21:32625000-32650000~~chr21:32800000-32825000, chr21:32650000-32675000~~chr21:32800000-32825000, chr21:32700000-32725000~~chr21:32800000-32825000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIE8T8JZ8, 4DNFIAWVDQ8C, 4DNFIOCW5AEM, 4DNFI3A3VYWU, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFIREVU1Z5, 4DNFI9VXTBE2, Direct, GSE118716, GSE101921, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, 4DNFI8JFOAJT
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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