Deatailed information for gene ENSG00000205930
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00020298
- Gene Symbol: C21orf62-AS1
- Ensembl ID: ENSG00000205930
-
Gene locus: chr21:32772203-32937249
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.5282
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.364
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,GM12892,K1,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,U-937,HUES64,SU-DHL-4,CyT49-hESC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:29025000-29050000~~chr21:32750000-32775000,
chr21:29050000-29075000~~chr21:32750000-32775000,
chr21:31100000-31125000~~chr21:32800000-32825000,
chr21:31200000-31225000~~chr21:32800000-32825000,
chr21:31675000-31700000~~chr21:32750000-32775000,
chr21:31725000-31750000~~chr21:32750000-32775000,
chr21:31865202-31867229~~chr21:32825802-32827847,
chr21:32325000-32350000~~chr21:32750000-32775000,
chr21:32350000-32375000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32750000-32775000,
chr21:32375000-32400000~~chr21:32800000-32825000,
chr21:32400000-32425000~~chr21:32825000-32850000,
chr21:32625000-32650000~~chr21:32800000-32825000,
chr21:32625000-32650000~~chr21:32850000-32875000,
chr21:32650000-32675000~~chr21:32750000-32775000,
chr21:32650000-32675000~~chr21:32800000-32825000,
chr21:32650000-32675000~~chr21:32825000-32850000,
chr21:32650000-32675000~~chr21:32875000-32900000,
chr21:32650000-32675000~~chr21:32925000-32950000,
chr21:32652383-32654378~~chr21:32825782-32827815,
chr21:32652386-32654426~~chr21:32825831-32827860,
chr21:32652389-32654469~~chr21:32825808-32827779,
chr21:32652409-32654456~~chr21:32825866-32827872,
chr21:32652429-32654433~~chr21:32825838-32827744,
chr21:32652434-32654776~~chr21:32825826-32827775,
chr21:32652483-32654348~~chr21:32825846-32827753,
chr21:32652489-32654409~~chr21:32825799-32827554,
chr21:32652499-32654463~~chr21:32825893-32827718,
chr21:32652522-32654350~~chr21:32825860-32827784,
chr21:32652542-32654360~~chr21:32825800-32827808,
chr21:32652578-32654325~~chr21:32825867-32827535,
chr21:32652587-32654469~~chr21:32825810-32827769,
chr21:32652605-32654451~~chr21:32825841-32827928,
chr21:32652616-32654320~~chr21:32825846-32827910,
chr21:32652635-32654427~~chr21:32825998-32827550,
chr21:32652673-32654332~~chr21:32825859-32827579,
chr21:32652681-32654365~~chr21:32825879-32827591,
chr21:32652689-32654365~~chr21:32825802-32827847,
chr21:32652693-32654360~~chr21:32825812-32827756,
chr21:32652694-32654377~~chr21:32825818-32827923,
chr21:32652697-32654249~~chr21:32825837-32827613,
chr21:32652727-32654348~~chr21:32825866-32827565,
chr21:32652742-32654378~~chr21:32825904-32827533,
chr21:32652754-32654437~~chr21:32825782-32827847,
chr21:32652755-32654212~~chr21:32826064-32827444,
chr21:32652769-32654256~~chr21:32826020-32827524,
chr21:32652778-32654242~~chr21:32826025-32827540,
chr21:32652835-32654360~~chr21:32825859-32827506,
chr21:32652869-32654298~~chr21:32825892-32827470,
chr21:32660370-32661816~~chr21:32825818-32827923,
chr21:32675000-32700000~~chr21:32825000-32850000,
chr21:32675000-32700000~~chr21:32925000-32950000,
chr21:32686727-32688995~~chr21:32825782-32827815,
chr21:32686771-32689009~~chr21:32825818-32827923,
chr21:32687246-32688984~~chr21:32825812-32827756,
chr21:32687269-32688980~~chr21:32825841-32827928,
chr21:32687309-32688956~~chr21:32825826-32827775,
chr21:32687321-32688946~~chr21:32825808-32827779,
chr21:32687493-32688873~~chr21:32770782-32773207,
chr21:32687503-32689164~~chr21:32825859-32827579,
chr21:32687504-32688956~~chr21:32825998-32827550,
chr21:32687515-32688913~~chr21:32825840-32827525,
chr21:32700000-32725000~~chr21:32800000-32825000,
chr21:32700000-32725000~~chr21:32850000-32875000,
chr21:32700000-32725000~~chr21:32875000-32900000,
chr21:32725000-32750000~~chr21:32850000-32875000,
chr21:32750000-32775000~~chr21:33525000-33550000,
chr21:32750000-32775000~~chr21:33550000-33575000,
chr21:32770202-32773460~~chr21:32825782-32827847,
chr21:32770305-32773399~~chr21:32825812-32827756,
chr21:32770782-32773207~~chr21:32826025-32827540,
chr21:32771496-32773602~~chr21:32819061-32820656,
chr21:32781484-32783866~~chr21:32825796-32827937,
chr21:32781555-32783879~~chr21:32825805-32827853,
chr21:32781953-32783489~~chr21:32825818-32827753,
chr21:32782012-32783834~~chr21:32825823-32827722,
chr21:32782063-32783530~~chr21:32825910-32827724,
chr21:32782069-32783524~~chr21:32825838-32827744,
chr21:32782107-32783797~~chr21:32825805-32827961,
chr21:32782109-32783791~~chr21:32825782-32827847,
chr21:32782139-32783507~~chr21:32825860-32827784,
chr21:32782221-32783814~~chr21:32825812-32827756,
chr21:32782266-32783476~~chr21:32825782-32827815,
chr21:32825000-32850000~~chr21:32925000-32950000,
chr21:32825000-32850000~~chr21:32950000-32975000,
chr21:32825000-32850000~~chr21:32975000-33000000,
chr21:32825000-32850000~~chr21:33000000-33025000,
chr21:32825000-32850000~~chr21:33100000-33125000,
chr21:32825000-32850000~~chr21:33125000-33150000,
chr21:32825000-32850000~~chr21:33150000-33175000,
chr21:32825000-32850000~~chr21:33175000-33200000,
chr21:32825000-32850000~~chr21:33300000-33325000,
chr21:32825000-32850000~~chr21:33350000-33375000,
chr21:32825000-32850000~~chr21:33375000-33400000,
chr21:32825000-32850000~~chr21:33425000-33450000,
chr21:32825000-32850000~~chr21:33450000-33475000,
chr21:32825000-32850000~~chr21:33600000-33625000,
chr21:32825000-32850000~~chr21:33875000-33900000,
chr21:32825000-32850000~~chr21:34350000-34375000,
chr21:32832056-32833659~~chr21:33196178-33197975,
chr21:32832067-32833668~~chr21:33196209-33197929,
chr21:32832075-32833690~~chr21:33196164-33197927,
chr21:32832170-32834191~~chr21:33126567-33128707,
chr21:32832231-32833433~~chr21:33196199-33197967,
chr21:32832273-32833550~~chr21:33126693-33128257,
chr21:32850000-32875000~~chr21:32950000-32975000,
chr21:32850000-32875000~~chr21:33125000-33150000,
chr21:32850000-32875000~~chr21:33175000-33200000,
chr21:32856562-32857810~~chr21:33126534-33128328,
chr21:32883476-32884977~~chr21:33126076-33128364,
chr21:32900000-32925000~~chr21:33000000-33025000,
chr21:32900000-32925000~~chr21:33100000-33125000,
chr21:32900000-32925000~~chr21:33175000-33200000,
chr21:32900000-32925000~~chr21:33375000-33400000,
chr21:32900000-32925000~~chr21:33425000-33450000,
chr21:32920781-32922713~~chr21:33126530-33128463,
chr21:32921032-32922590~~chr21:33126606-33128591,
chr21:32921094-32922827~~chr21:33126568-33128575,
chr21:32921102-32922797~~chr21:33126505-33128560,
chr21:32921110-32922482~~chr21:33126613-33128557,
chr21:32921135-32922576~~chr21:33126574-33128587,
chr21:32921135-32922576~~chr21:33196131-33197893,
chr21:32921166-32922522~~chr21:33126076-33128364,
chr21:32921267-32922473~~chr21:33126551-33128322,
chr21:32925000-32950000~~chr21:33025000-33050000,
chr21:32925000-32950000~~chr21:33050000-33075000,
chr21:32925000-32950000~~chr21:33100000-33125000,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32925000-32950000~~chr21:33175000-33200000,
chr21:32925000-32950000~~chr21:33325000-33350000,
chr21:32925000-32950000~~chr21:33375000-33400000,
chr21:32925000-32950000~~chr21:33425000-33450000,
chr21:32925000-32950000~~chr21:33450000-33475000,
chr21:32932095-32934173~~chr21:33112444-33114058,
chr21:32939527-32941602~~chr21:33126568-33128575,
chr21:32939550-32941640~~chr21:33126505-33128560,
chr21:32939565-32941655~~chr21:33126529-33128418,
chr21:32939574-32941665~~chr21:33126530-33128463,
chr21:32939576-32941702~~chr21:33126588-33128342,
chr21:32939583-32941572~~chr21:33126549-33128537,
chr21:32939598-32941625~~chr21:33196237-33197895,
chr21:32939598-32941688~~chr21:33126574-33128599,
chr21:32939603-32941698~~chr21:33126574-33128587,
chr21:32939611-32941443~~chr21:33126633-33128265,
chr21:32939614-32941661~~chr21:33126551-33128322,
chr21:32939617-32941600~~chr21:33196262-33197907,
chr21:32939619-32941696~~chr21:33196164-33197927,
chr21:32939647-32941630~~chr21:33126534-33128328,
chr21:32939664-32941472~~chr21:33126606-33128591,
chr21:32939673-32941295~~chr21:33196226-33197905,
chr21:32939681-32941566~~chr21:33444394-33446526,
chr21:32939696-32941568~~chr21:33126563-33128587,
chr21:32939770-32941261~~chr21:33196285-33197839,
chr21:32939854-32941385~~chr21:33126587-33128243,
chr21:32939856-32941390~~chr21:33126650-33128283,
chr21:32939856-32941390~~chr21:33195966-33197950,
chr21:8200000-8225000~~chr21:32750000-32775000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, GSE99541, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, 4DNFIIMZB6Y9, ENCSR452NHL, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIH9U4I7I, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, ENCSR444BAR, 4DNFIL9M97T2, 4DNFIA7GB1NB, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, GSE48592, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, 4DNFI6EIFUZI, ENCSR866FWQ, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIZF1KI43, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .