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Basic information

CohesinDB ID: CDBG00020333

Gene Symbol: KRTAP27-1

Ensembl ID: ENSG00000206107

Gene locus: chr21:30337012-30337694 Strand: -

Gene type: protein_coding

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0661 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,DU145,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,Hep-G2,HT-1197,Kelly,H1-hESC,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,NPC-H9,Skin-Fibroblast,Jurkat,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQWD8ZYD, ENCSR662QKG, ENCSR194SRI, 4DNFIMROE6N4, GSE118716, 4DNFI5SUHCGZ, ENCSR361AYD, ENCSR146FPM, ENCSR672RHL, GSE103148, 4DNFIILDWK8M, ENCSR410MDC, 4DNFIEYQ5ZIR, ENCSR478BMT, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIREVU1Z5, 4DNFII6AN691, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, GSE97394, GSE68977, ENCSR752QCX, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, ENCSR128RPG, 4DNFI9YAVTI1, 4DNFIIMZB6Y9, ENCSR658RQQ, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIX7H3CE2, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFI8JFOAJT, ENCSR393LOP, ENCSR991JXX, 4DNFI9815EEJ, ENCSR404HWQ, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFIJ8JKKWJ, 4DNFINEQY95T, ENCSR094EIC, 4DNFIDZT7PR8, GSE105028, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000206107