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Basic information

CohesinDB ID: CDBG00021039

Gene Symbol: Y_RNA

Ensembl ID: ENSG00000207416

Gene locus: chr21:36986738-36986851 Strand: -

Gene type: misc_RNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0190 FDR = 0.0143
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,GM12878,K-562,A-549,HFFc6,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,REC-1,ARPE-19,Germinal-Center-B,Hep-G2,H1-hESC,Motor-Neuron,MSLCL,SU-DHL-4,RT-112,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE116875, GSE118716, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR146FPM, 4DNFI7H4II2V, ENCSR350NJV, ENCSR113OIR, 4DNFIYD8LO9Z, ENCSR381DCY, GSE155380, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFI1UEG1HD, GSE108869, ENCSR244BBG, 4DNFIQVMVRP6, ENCSR110JOO, 4DNFIFLJLIS5, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000207416