Deatailed information for gene ENSG00000212479

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  • Basic information
  • CohesinDB ID: CDBG00021950
  • Gene Symbol: U3
  • Ensembl ID: ENSG00000212479
  • Gene locus: chr21:29180424-29180639 Strand: -
  • Gene type: snoRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0002 FDR = 0.9848
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,Liver,GM12878,Germinal-Center-B,IMR-90,K-562,A-549,H1-hESC,HFF-hTERT,HT-1376,Brain-Pericyte,GM12892,HeLa-S3
  • Related loop: chr21:29075000-29100000~~chr21:29175000-29200000, chr21:29124718-29126312~~chr21:29176363-29177502, chr21:29175000-29200000~~chr21:29275000-29300000, chr21:29175000-29200000~~chr21:29300000-29325000, chr21:29175000-29200000~~chr21:29350000-29375000, chr21:29175000-29200000~~chr21:31250000-31275000, chr21:29181177-29183351~~chr21:29297767-29300990, chr21:29181313-29182963~~chr21:29347735-29349361,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, GSE43070, 4DNFIE8E4ANZ, GSE108787, GSE84022, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIBM714BP, ENCSR587DSF, 4DNFIM2BMJ33, Direct, 4DNFISPUVQHA, 4DNFIQVMVRP6, 4DNFI9ZWZ5BS, ENCSR323QIP, 4DNFIFI6NIKJ, ENCSR933UZH, 4DNFIDBIEXI7, GSE58752, ENCSR033GUP
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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