Deatailed information for gene ENSG00000212564

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  • Basic information
  • CohesinDB ID: CDBG00021996
  • Gene Symbol: RNU6-1326P
  • Ensembl ID: ENSG00000212564
  • Gene locus: chr21:15614282-15614389 Strand: +
  • Gene type: snRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0342 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,HFFc6,HeLa-S3,RT-112
  • Related loop: chr21:15600000-15625000~~chr21:15700000-15725000, chr21:15600000-15625000~~chr21:15800000-15825000, chr21:15600000-15625000~~chr21:15825000-15850000, chr21:15600000-15625000~~chr21:17600000-17625000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFIQVMVRP6, 4DNFIVJ3IIQL, Direct, 4DNFIMROE6N4, GSE108787, 4DNFICEGAHRC, GSE155380, 4DNFI7H4II2V
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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