Deatailed information for gene ENSG00000212609
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00022024
- Gene Symbol: RNU1-139P
- Ensembl ID: ENSG00000212609
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Gene locus: chr21:19345147-19345312
Strand: +
- Gene type: snRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0464
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H9-hESC,HAP1
- Related loop:
chr21:18275000-18300000~~chr21:19325000-19350000,
chr21:18500000-18525000~~chr21:19350000-19375000,
chr21:19325000-19350000~~chr21:19500000-19525000,
chr21:19325000-19350000~~chr21:20875000-20900000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE105028, 4DNFIYD8LO9Z, Direct, 4DNFI3A3VYWU
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .