Deatailed information for gene ENSG00000212933
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00022070
- Gene Symbol: KRTAP12-4
- Ensembl ID: ENSG00000212933
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Gene locus: chr21:44654212-44654659
Strand: -
- Gene type: protein_coding
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0347
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HEK293T,Hep-G2,K-562,TAMR-MCF7,H1-hESC,HFF-hTERT,HFFc6,MCF7-FASR,HeLa-S3
- Related loop:
chr21:22525000-22550000~~chr21:44650000-44675000,
chr21:27500000-27525000~~chr21:44625000-44650000,
chr21:27500000-27525000~~chr21:44650000-44675000,
chr21:44475000-44500000~~chr21:44650000-44675000,
chr21:44625000-44650000~~chr21:44725000-44750000,
chr21:44625000-44650000~~chr21:45725000-45750000,
chr21:44650000-44675000~~chr21:44875000-44900000,
chr21:44650000-44675000~~chr21:45200000-45225000,
chr21:44650000-44675000~~chr21:45325000-45350000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
GSE44267, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIBM714BP, 4DNFIM2BMJ33, Direct, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, 4DNFIFLJLIS5, 4DNFIB7QTIMH, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIW8TIFI5, 4DNFICEGAHRC, 4DNFIIMZB6Y9
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .