Deatailed information for gene ENSG00000214914
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00022947
- Gene Symbol: RPL23AP3
- Ensembl ID: ENSG00000214914
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Gene locus: chr21:36016078-36016546
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3538
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.426
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12878,RT-112,Hep-G2,IMR-90,K-562,H1-hESC,A-549,CyT49-pancreatic,HFFc6,U-937,CyT49-hESC
- Related loop:
chr21:34350000-34375000~~chr21:36000000-36025000,
chr21:34750000-34775000~~chr21:36000000-36025000,
chr21:35050018-35052226~~chr21:36020644-36022430,
chr21:35850000-35875000~~chr21:36000000-36025000,
chr21:36000000-36025000~~chr21:39125000-39150000,
chr21:7800000-7825000~~chr21:36000000-36025000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR393LOP, 4DNFI9YAVTI1, 4DNFI9815EEJ, 4DNFIKYXMF1E, Direct, 4DNFIMROE6N4, 4DNFITUOMFUQ, GSE165038, 4DNFIFLJLIS5, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR852KQC, GSE155380
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .