Deatailed information for gene ENSG00000214955
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00022962
- Gene Symbol: AP000317.1
- Ensembl ID: ENSG00000214955
-
Gene locus: chr21:34205054-34325034
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.4145
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.533
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,Keratinocytes192627,Aorta,GM12892,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,Liver,ARPE-19,HCT-116,Germinal-Center-B,REC-1,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,GM19240,U-937,BMEC,HUES64,SU-DHL-4,H1-NPC,CyT49-hESC,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,Left-Ventricle,Jurkat,CC-2551,HFF-hTERT,HAP1,MCF7-FASR,U251
- Related loop:
chr21:32350000-32375000~~chr21:34325000-34350000,
chr21:33550000-33575000~~chr21:34200000-34225000,
chr21:33625000-33650000~~chr21:34325000-34350000,
chr21:33675000-33700000~~chr21:34200000-34225000,
chr21:33675000-33700000~~chr21:34250000-34275000,
chr21:33675000-33700000~~chr21:34325000-34350000,
chr21:33700000-33725000~~chr21:34200000-34225000,
chr21:33700000-33725000~~chr21:34250000-34275000,
chr21:33700000-33725000~~chr21:34325000-34350000,
chr21:33775000-33800000~~chr21:34250000-34275000,
chr21:33850000-33875000~~chr21:34325000-34350000,
chr21:33875000-33900000~~chr21:34325000-34350000,
chr21:33900000-33925000~~chr21:34200000-34225000,
chr21:33900000-33925000~~chr21:34225000-34250000,
chr21:33900000-33925000~~chr21:34250000-34275000,
chr21:33900000-33925000~~chr21:34325000-34350000,
chr21:33922474-33925874~~chr21:34242616-34244890,
chr21:33922478-33925703~~chr21:34242552-34244759,
chr21:33922482-33925641~~chr21:34242769-34244742,
chr21:33922485-33925689~~chr21:34242598-34244771,
chr21:33922491-33925917~~chr21:34200938-34203575,
chr21:33922491-33925917~~chr21:34242559-34244950,
chr21:33922497-33925632~~chr21:34200972-34203070,
chr21:33922497-33925632~~chr21:34242565-34244736,
chr21:33922506-33925702~~chr21:34231067-34232322,
chr21:33922506-33925702~~chr21:34243018-34244439,
chr21:33922677-33925654~~chr21:34242517-34244715,
chr21:33922678-33925692~~chr21:34230884-34232496,
chr21:33922678-33925692~~chr21:34242813-34244834,
chr21:33922723-33925649~~chr21:34201110-34202883,
chr21:33922723-33925649~~chr21:34242578-34244694,
chr21:33922731-33925983~~chr21:34242565-34244760,
chr21:33922747-33925710~~chr21:34200971-34203170,
chr21:33922774-33925646~~chr21:34243082-34244282,
chr21:33922794-33925655~~chr21:34201154-34203236,
chr21:33922794-33925655~~chr21:34242558-34244863,
chr21:33922795-33925611~~chr21:34201401-34202935,
chr21:33922795-33925611~~chr21:34243084-34244434,
chr21:33922795-33925867~~chr21:34242537-34244933,
chr21:33922803-33925652~~chr21:34230934-34232390,
chr21:33922803-33925652~~chr21:34243116-34244483,
chr21:33922807-33925639~~chr21:34230926-34232381,
chr21:33922807-33925639~~chr21:34242597-34244750,
chr21:33922811-33925629~~chr21:34242516-34244705,
chr21:33922829-33925686~~chr21:34201098-34202995,
chr21:33922829-33925686~~chr21:34242574-34244710,
chr21:33922904-33925886~~chr21:34242518-34244755,
chr21:33923095-33925670~~chr21:34201035-34203141,
chr21:33923095-33925670~~chr21:34242647-34244858,
chr21:33923120-33925433~~chr21:34201133-34203155,
chr21:33923120-33925433~~chr21:34242660-34244787,
chr21:33923122-33925635~~chr21:34201046-34202955,
chr21:33923122-33925635~~chr21:34242849-34244739,
chr21:33923122-33925657~~chr21:34242859-34244409,
chr21:33923122-33925676~~chr21:34201509-34202753,
chr21:33923122-33925676~~chr21:34243033-34244588,
chr21:33923143-33925876~~chr21:34201024-34203002,
chr21:33923143-33925876~~chr21:34242626-34244598,
chr21:33923144-33925455~~chr21:34200887-34202910,
chr21:33923144-33925455~~chr21:34243074-34244709,
chr21:33923160-33925641~~chr21:34242525-34244685,
chr21:33923163-33925652~~chr21:34230928-34232534,
chr21:33923163-33925652~~chr21:34242624-34244691,
chr21:33923167-33925446~~chr21:34243125-34244618,
chr21:33923181-33925620~~chr21:34242939-34244436,
chr21:33923185-33925313~~chr21:34242635-34244717,
chr21:33923186-33925791~~chr21:34242603-34244424,
chr21:33923188-33925377~~chr21:34201102-34203387,
chr21:33923188-33925377~~chr21:34243095-34244510,
chr21:33923188-33925626~~chr21:34242831-34244481,
chr21:33923203-33925479~~chr21:34242612-34244684,
chr21:33923267-33925674~~chr21:34201419-34202832,
chr21:33923267-33925674~~chr21:34243002-34244459,
chr21:33923273-33925677~~chr21:34201261-34203165,
chr21:33923273-33925677~~chr21:34231086-34232306,
chr21:33923273-33925677~~chr21:34242680-34244482,
chr21:33923297-33925666~~chr21:34243033-34244434,
chr21:33923351-33925672~~chr21:34231078-34232324,
chr21:33923351-33925672~~chr21:34243120-34244473,
chr21:33923355-33925607~~chr21:34243041-34244462,
chr21:33923428-33925646~~chr21:34243111-34244377,
chr21:33925000-33950000~~chr21:34200000-34225000,
chr21:33925000-33950000~~chr21:34225000-34250000,
chr21:33925000-33950000~~chr21:34325000-34350000,
chr21:33950000-33975000~~chr21:34200000-34225000,
chr21:33950000-33975000~~chr21:34325000-34350000,
chr21:33974960-33977785~~chr21:34201385-34202931,
chr21:33975000-34000000~~chr21:34200000-34225000,
chr21:33975000-34000000~~chr21:34325000-34350000,
chr21:34050000-34075000~~chr21:34200000-34225000,
chr21:34050000-34075000~~chr21:34250000-34275000,
chr21:34050000-34075000~~chr21:34325000-34350000,
chr21:34072078-34075520~~chr21:34201046-34202955,
chr21:34075000-34100000~~chr21:34325000-34350000,
chr21:34100000-34125000~~chr21:34200000-34225000,
chr21:34100000-34125000~~chr21:34325000-34350000,
chr21:34125000-34150000~~chr21:34225000-34250000,
chr21:34125000-34150000~~chr21:34250000-34275000,
chr21:34125000-34150000~~chr21:34325000-34350000,
chr21:34126294-34127644~~chr21:34200972-34203070,
chr21:34128276-34130379~~chr21:34200926-34203224,
chr21:34128540-34130047~~chr21:34201503-34202809,
chr21:34128593-34130330~~chr21:34201154-34203236,
chr21:34133133-34135105~~chr21:34242552-34244759,
chr21:34133158-34135052~~chr21:34201091-34202966,
chr21:34150000-34175000~~chr21:34250000-34275000,
chr21:34150000-34175000~~chr21:34325000-34350000,
chr21:34175000-34200000~~chr21:34325000-34350000,
chr21:34200000-34225000~~chr21:34300000-34325000,
chr21:34200000-34225000~~chr21:34325000-34350000,
chr21:34200000-34225000~~chr21:34525000-34550000,
chr21:34200000-34225000~~chr21:34600000-34625000,
chr21:34225000-34250000~~chr21:34325000-34350000,
chr21:34225000-34250000~~chr21:34500000-34525000,
chr21:34250000-34275000~~chr21:34500000-34525000,
chr21:34300000-34325000~~chr21:34500000-34525000,
chr21:34300000-34325000~~chr21:34600000-34625000,
chr21:34300000-34325000~~chr21:35675000-35700000,
chr21:34325000-34350000~~chr21:34500000-34525000,
chr21:34325000-34350000~~chr21:34525000-34550000,
chr21:34325000-34350000~~chr21:34600000-34625000,
chr21:34325000-34350000~~chr21:34625000-34650000,
chr21:34325000-34350000~~chr21:35725000-35750000,
chr21:34325000-34350000~~chr21:36075000-36100000,
chr21:7750000-7775000~~chr21:34225000-34250000,
chr21:7750000-7775000~~chr21:34325000-34350000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFIATA1HD5, 4DNFIHMCILEN, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, 4DNFIBN9K4V9, ENCSR361AYD, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE108869, GSE116872, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, 4DNFIOX3BGNE, ENCSR478BMT, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, 4DNFIJBJ6QVH, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, GSE125243, 4DNFIPAF4PYT, GSE48592, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, 4DNFIRZA6EV6, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFIP25GZGA, ENCSR866FWQ, 4DNFIBCIA62Q, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFITS16HW8, ENCSR312TUD, GSE101921, ENCSR228TUX, 4DNFIZF1KI43, 4DNFI8JFOAJT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFILIM6FDL, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .