Deatailed information for gene ENSG00000215088
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00023011
- Gene Symbol: RPS5P3
- Ensembl ID: ENSG00000215088
-
Gene locus: chr21:33481579-33482195
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1512
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.913
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: iPSC,Hep-G2,H1-hESC,HFFc6,SU-DHL-2,HeLa-S3,hTERT-HME1,SU-DHL-4
- Related loop:
chr21:27500000-27525000~~chr21:33475000-33500000,
chr21:33199071-33200963~~chr21:33478656-33481090,
chr21:33478460-33481029~~chr21:33894201-33895840,
chr21:33478501-33481049~~chr21:33490733-33492612,
chr21:33478624-33481448~~chr21:33894294-33895564,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR991JXX, 4DNFIQYQWPF5, ENCSR658RQQ, 4DNFI5LCW273, 4DNFI2J1ODWB, Direct, 4DNFIMROE6N4, 4DNFIFLJLIS5, 4DNFICEGAHRC, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, 4DNFIIMZB6Y9, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .