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Basic information

CohesinDB ID: CDBG00023144

Gene Symbol: AATBC

Ensembl ID: ENSG00000215458

Gene locus: chr21:43805757-43812567 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1621 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.623
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,MB157,DU145,GM12892,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,HCT-116,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,HUVEC,HL-60,NPC-H9,RT-112,Skin-Fibroblast,KBM-7,Jurkat,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, 4DNFITUOMFUQ, 4DNFIVOJGWNP, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFIZ4F74QR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, ENCSR668RDP, 4DNFIS3DIH4V, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, GSE116872, ENCSR305RTT, ENCSR000FDB, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIIFBC8WN, ENCSR662QKG, GSE118716, ENCSR499RVD, GSE155380, 4DNFIJWBWE41, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIH2A7IKF, ENCSR194SRI, 4DNFIBRSIPE4, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIR8OU6QJ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, ENCSR410MDC, 4DNFI5ERM9J7, ENCSR732QOH, 4DNFIFHU75I5, 4DNFIYD8LO9Z, 4DNFI15FPSQL, ENCSR123UVP, 4DNFIJBJ6QVH, 4DNFI3A3VYWU, 4DNFIX4PJKXZ, GSE165038, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, ENCSR933UZH, ENCSR094EIC, GSE116869, 4DNFIMROE6N4, 4DNFI5SUHCGZ, 4DNFIILDWK8M, ENCSR866FWQ, 4DNFI6EIFUZI, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIOUSETUP, ENCSR752QCX, 4DNFIJ3DZPGM, ENCSR128RPG, 4DNFISTWNV9C, GSE101921, ENCSR228TUX, 4DNFIC3HAU11, ENCSR247RGI, ENCSR338WUS, 4DNFI5LCW273, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000215458