Deatailed information for gene ENSG00000215533
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00023166
- Gene Symbol: LINC00189
- Ensembl ID: ENSG00000215533
-
Gene locus: chr21:29193479-29288205
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0930
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.585
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,hTERT-HME1,H1-Mesenchymal,MCF-7,GM12891,GM12878,K-562,A-549,HeLa-S3,SU-DHL-2,H9-hESC,Liver,Germinal-Center-B,HT-1197,H1-hESC,GM19238,Brain-Pericyte,SU-DHL-4,KBM-7,CC-2551,HFF-hTERT
- Related loop:
chr21:17700000-17725000~~chr21:29200000-29225000,
chr21:25450000-25475000~~chr21:29225000-29250000,
chr21:29075000-29100000~~chr21:29175000-29200000,
chr21:29075000-29100000~~chr21:29200000-29225000,
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29162246-29165257~~chr21:29217358-29218786,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29300000-29325000,
chr21:29175000-29200000~~chr21:29350000-29375000,
chr21:29175000-29200000~~chr21:31250000-31275000,
chr21:29195502-29197292~~chr21:29297767-29300990,
chr21:29225000-29250000~~chr21:29325000-29350000,
chr21:29225000-29250000~~chr21:29350000-29375000,
chr21:29230443-29234332~~chr21:29297765-29300738,
chr21:29232431-29234308~~chr21:29347637-29349372,
chr21:29232432-29234372~~chr21:29371556-29373423,
chr21:29232434-29234183~~chr21:29371542-29373242,
chr21:29232441-29234476~~chr21:29371286-29373596,
chr21:29232451-29234354~~chr21:29371361-29373472,
chr21:29232529-29234351~~chr21:29371520-29373447,
chr21:29232806-29234518~~chr21:29297832-29300927,
chr21:29235070-29236701~~chr21:29297903-29299607,
chr21:29267276-29269314~~chr21:29371542-29373242,
chr21:29267340-29269377~~chr21:29347233-29349373,
chr21:29267340-29269377~~chr21:29371361-29373472,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, GSE84022, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIBM714BP, GSE99541, ENCSR981FNA, ENCSR587DSF, ENCSR128RPG, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, ENCSR299VMZ, Direct, 4DNFISPUVQHA, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFI1UEG1HD, GSE101921, GSE108869, ENCSR991JXX, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFI9ZWZ5BS, ENCSR338WUS, 4DNFIE5TEYK7, ENCSR323QIP, 4DNFIFI6NIKJ, ENCSR527RXH, GSE105028, 4DNFIDBIEXI7, 4DNFIDZT7PR8, GSE58752, 4DNFIT96Z365
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .