Deatailed information for gene ENSG00000215734
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00023200
- Gene Symbol: MRPL20P1
- Ensembl ID: ENSG00000215734
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Gene locus: chr21:36994642-36995075
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0600
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MB157,K1,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,GM12878,K-562,A-549,HFFc6,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,NCI-H1437,REC-1,ARPE-19,Germinal-Center-B,Hep-G2,H1-hESC,Motor-Neuron,MSLCL,SU-DHL-4,RT-112,HFF-hTERT,HAP1
- Related loop:
chr21:31725000-31750000~~chr21:36975000-37000000,
chr21:36429447-36431439~~chr21:36989316-36991217,
chr21:36938657-36940545~~chr21:36989154-36991337,
chr21:36975000-37000000~~chr21:37075000-37100000,
chr21:36975000-37000000~~chr21:37200000-37225000,
chr21:36975000-37000000~~chr21:37225000-37250000,
chr21:36975000-37000000~~chr21:37250000-37275000,
chr21:36975000-37000000~~chr21:37350000-37375000,
chr21:36975000-37000000~~chr21:37475000-37500000,
chr21:36975000-37000000~~chr21:37550000-37575000,
chr21:36975000-37000000~~chr21:37625000-37650000,
chr21:36975000-37000000~~chr21:37650000-37675000,
chr21:36975000-37000000~~chr21:37850000-37875000,
chr21:36975000-37000000~~chr21:37900000-37925000,
chr21:36975000-37000000~~chr21:38125000-38150000,
chr21:36976280-36978448~~chr21:36989013-36991518,
chr21:36976391-36978395~~chr21:36988956-36991174,
chr21:36976420-36978406~~chr21:36989198-36991097,
chr21:36976439-36978624~~chr21:36989354-36991335,
chr21:36976458-36978476~~chr21:36989166-36991059,
chr21:36989121-36991424~~chr21:37071179-37074846,
chr21:36989176-36991225~~chr21:37915637-37917611,
chr21:36989316-36991217~~chr21:37086306-37088100,
chr21:36999877-37001750~~chr21:37078770-37080416,
chr21:36999885-37001435~~chr21:37078647-37080436,
chr21:36999930-37001432~~chr21:37078697-37080394,
chr21:36999934-37001381~~chr21:37086150-37088199,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE116875, GSE118716, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR146FPM, 4DNFI7H4II2V, ENCSR350NJV, ENCSR113OIR, 4DNFIYD8LO9Z, ENCSR381DCY, GSE155380, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFI1UEG1HD, GSE108869, ENCSR244BBG, 4DNFIQVMVRP6, ENCSR110JOO, 4DNFIFLJLIS5, ENCSR833CMG, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .