Deatailed information for gene ENSG00000217026

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00023378
  • Gene Symbol: RPL10P1
  • Ensembl ID: ENSG00000217026
  • Gene locus: chr21:27420379-27421023 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.2393 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.600
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HFF-hTERT,H9-hESC,HT-1376,H1-hESC
  • Related loop: chr21:26714841-26717171~~chr21:27422531-27425391, chr21:26850000-26875000~~chr21:27400000-27425000, chr21:26850000-26875000~~chr21:27425000-27450000, chr21:27200000-27225000~~chr21:27400000-27425000, chr21:27250000-27275000~~chr21:27425000-27450000, chr21:27300000-27325000~~chr21:27425000-27450000,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFIE8T8JZ8, Direct, 4DNFIFI6NIKJ, 4DNFISPUVQHA, ENCSR933UZH, GSE105028, 4DNFIZ4F74QR
  • Cohesin-loop subunit: CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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