Deatailed information for gene ENSG00000221837

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  • Basic information
  • CohesinDB ID: CDBG00024050
  • Gene Symbol: KRTAP10-9
  • Ensembl ID: ENSG00000221837
  • Gene locus: chr21:44627092-44628378 Strand: +
  • Gene type: protein_coding
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0304 FDR = 0.0001
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: K-562,H1-hESC,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC
  • Related loop: chr21:27500000-27525000~~chr21:44625000-44650000, chr21:44500000-44525000~~chr21:44600000-44625000, chr21:44625000-44650000~~chr21:44725000-44750000, chr21:44625000-44650000~~chr21:45725000-45750000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: 4DNFIQYQWPF5, 4DNFIM2BMJ33, Direct, 4DNFIMROE6N4, GSE118716, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICEGAHRC, 4DNFIIMZB6Y9
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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