Deatailed information for gene ENSG00000222042
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00024138
- Gene Symbol: AP001341.1
- Ensembl ID: ENSG00000222042
-
Gene locus: chr21:25169431-25361868
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1488
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.966
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,GM12892,K1,GM19239,GM12891,GM12878,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,REC-1,ARPE-19,H1-hESC,HCC1599,GM19238,MSLCL,HUES64,SU-DHL-4,CyT49-endoderm,Skin-Fibroblast,Jurkat,HFF-hTERT,HAP1
- Related loop:
chr21:17775000-17800000~~chr21:25175000-25200000,
chr21:18250000-18275000~~chr21:25300000-25325000,
chr21:21000000-21025000~~chr21:25300000-25325000,
chr21:21000000-21025000~~chr21:25325000-25350000,
chr21:21175000-21200000~~chr21:25325000-25350000,
chr21:21175000-21200000~~chr21:25350000-25375000,
chr21:21700000-21725000~~chr21:25350000-25375000,
chr21:22775000-22800000~~chr21:25300000-25325000,
chr21:22800000-22825000~~chr21:25300000-25325000,
chr21:23075000-23100000~~chr21:25300000-25325000,
chr21:23125000-23150000~~chr21:25300000-25325000,
chr21:23300000-23325000~~chr21:25300000-25325000,
chr21:23375000-23400000~~chr21:25300000-25325000,
chr21:23525000-23550000~~chr21:25300000-25325000,
chr21:23700000-23725000~~chr21:25300000-25325000,
chr21:23850000-23875000~~chr21:25300000-25325000,
chr21:23900000-23925000~~chr21:25300000-25325000,
chr21:24050000-24075000~~chr21:25300000-25325000,
chr21:24250000-24275000~~chr21:25300000-25325000,
chr21:24500000-24525000~~chr21:25300000-25325000,
chr21:24550000-24575000~~chr21:25300000-25325000,
chr21:24875000-24900000~~chr21:25300000-25325000,
chr21:24875000-24900000~~chr21:25325000-25350000,
chr21:24875000-24900000~~chr21:25350000-25375000,
chr21:24894830-24897390~~chr21:25215384-25217157,
chr21:24894830-24897390~~chr21:25312872-25315048,
chr21:24894830-24897394~~chr21:25312901-25315101,
chr21:24895174-24897331~~chr21:25312989-25315108,
chr21:24895257-24897346~~chr21:25312934-25315135,
chr21:24895365-24897344~~chr21:25313202-25314755,
chr21:24895404-24897444~~chr21:25312967-25315286,
chr21:24895412-24897320~~chr21:25215564-25217094,
chr21:24895412-24897320~~chr21:25312932-25315067,
chr21:24895412-24897374~~chr21:25312992-25315465,
chr21:24895417-24897339~~chr21:25313184-25314751,
chr21:24895431-24897366~~chr21:25312835-25315056,
chr21:24895454-24897237~~chr21:25312980-25314897,
chr21:24895454-24897362~~chr21:25313390-25314757,
chr21:24895469-24897373~~chr21:25312888-25315096,
chr21:24895480-24897346~~chr21:25313190-25314774,
chr21:24895510-24897368~~chr21:25312968-25315386,
chr21:24895560-24897204~~chr21:25313326-25315106,
chr21:24895563-24897074~~chr21:25313003-25315176,
chr21:24895582-24897226~~chr21:25313215-25314816,
chr21:24900000-24925000~~chr21:25300000-25325000,
chr21:24954838-24956486~~chr21:25297991-25299598,
chr21:25000000-25025000~~chr21:25200000-25225000,
chr21:25025000-25050000~~chr21:25175000-25200000,
chr21:25025000-25050000~~chr21:25250000-25275000,
chr21:25025000-25050000~~chr21:25300000-25325000,
chr21:25025000-25050000~~chr21:25350000-25375000,
chr21:25038898-25041036~~chr21:25312967-25315286,
chr21:25038960-25041269~~chr21:25312968-25315386,
chr21:25039015-25040833~~chr21:25282963-25284708,
chr21:25050000-25075000~~chr21:25300000-25325000,
chr21:25125000-25150000~~chr21:25300000-25325000,
chr21:25173538-25175402~~chr21:25273500-25274863,
chr21:25175000-25200000~~chr21:25300000-25325000,
chr21:25175000-25200000~~chr21:25375000-25400000,
chr21:25175000-25200000~~chr21:25475000-25500000,
chr21:25175000-25200000~~chr21:25550000-25575000,
chr21:25175526-25177901~~chr21:25188035-25189709,
chr21:25175526-25177901~~chr21:25297853-25299743,
chr21:25175735-25177434~~chr21:25188189-25189467,
chr21:25176136-25177376~~chr21:25187122-25189516,
chr21:25185361-25187101~~chr21:25215615-25217170,
chr21:25188035-25189709~~chr21:25297853-25299743,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25275000-25300000~~chr21:25375000-25400000,
chr21:25282035-25284813~~chr21:25385187-25387188,
chr21:25282774-25284961~~chr21:25384973-25387124,
chr21:25282884-25285002~~chr21:25384844-25387316,
chr21:25282903-25284758~~chr21:25385202-25387023,
chr21:25282928-25284802~~chr21:25384906-25387309,
chr21:25282960-25285079~~chr21:25312835-25315056,
chr21:25283150-25284658~~chr21:25385262-25387043,
chr21:25300000-25325000~~chr21:25525000-25550000,
chr21:25300000-25325000~~chr21:26800000-26825000,
chr21:25300000-25325000~~chr21:27200000-27225000,
chr21:25325000-25350000~~chr21:25575000-25600000,
chr21:25325000-25350000~~chr21:26125000-26150000,
chr21:25325000-25350000~~chr21:29000000-29025000,
chr21:25349142-25351714~~chr21:25384975-25387237,
chr21:25349194-25351726~~chr21:25385187-25387188,
chr21:25349223-25351193~~chr21:25385202-25387023,
chr21:25349228-25351734~~chr21:25384973-25387124,
chr21:25349249-25351723~~chr21:25385057-25387036,
chr21:25349307-25351726~~chr21:25385207-25387036,
chr21:25349328-25351256~~chr21:25385367-25387046,
chr21:25349357-25351711~~chr21:25384906-25387309,
chr21:25349579-25351235~~chr21:25385229-25387028,
chr21:25350000-25375000~~chr21:26150000-26175000,
chr21:25350000-25375000~~chr21:28425000-28450000,
chr21:25350000-25375000~~chr21:28625000-28650000,
chr21:25350000-25375000~~chr21:28975000-29000000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, GSE95015, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIB7QTIMH, 4DNFI5SUHCGZ, ENCSR852KQC, ENCSR361AYD, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR981FNA, GSE97394, ENCSR587DSF, ENCSR752QCX, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, ENCSR128RPG, 4DNFI9YAVTI1, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFISPUVQHA, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFII84FBKM, GSE116872, 4DNFI9815EEJ, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR110JOO, 4DNFIVJ3IIQL, ENCSR527RXH, 4DNFIFLJLIS5, GSE105028, 4DNFIZGCA8AH, 4DNFIH7TH4MF, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .