Deatailed information for gene ENSG00000223262
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00024563
- Gene Symbol: RNA5SP492
- Ensembl ID: ENSG00000223262
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Gene locus: chr21:42221172-42221286
Strand: +
- Gene type: rRNA_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0694
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12878,Germinal-Center-B,K-562,H1-hESC,GM19238,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:33200000-33225000~~chr21:42225000-42250000,
chr21:38225000-38250000~~chr21:42225000-42250000,
chr21:41425000-41450000~~chr21:42200000-42225000,
chr21:41850000-41875000~~chr21:42225000-42250000,
chr21:42125000-42150000~~chr21:42225000-42250000,
chr21:42200000-42225000~~chr21:42800000-42825000,
chr21:42218352-42220994~~chr21:42231997-42235488,
chr21:42218680-42222703~~chr21:42232839-42235624,
chr21:42225000-42250000~~chr21:42525000-42550000,
chr21:42225000-42250000~~chr21:43350000-43375000,
chr21:42225000-42250000~~chr21:44250000-44275000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI9YAVTI1, 4DNFIPAF4PYT, Direct, GSE118716, ENCSR527RXH, 4DNFISPUVQHA, 4DNFI1UEG1HD, GSE84022, ENCSR587DSF, ENCSR410MDC
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .