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Basic information

CohesinDB ID: CDBG00024628

Gene Symbol: AP006748.1

Ensembl ID: ENSG00000223400

Gene locus: chr21:41576134-41581319 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0262 FDR = 0.0007
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.960
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,RT-112,TAMR-MCF7,H1-hESC,A-549,HFF-hTERT,HFFc6,MCF7-FASR,H1-Mesendoderm,HUVEC

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIE8T8JZ8, ENCSR393LOP, GSE52457, 4DNFI3CFMRID, 4DNFIC3HAU11, 4DNFIBM714BP, Direct, GSE94872, GSE118716, 4DNFIFLJLIS5, ENCSR499RVD, GSE155380, 4DNFIYIAUEPW, 4DNFII84FBKM

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000223400